Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04278 ATGGCTAAGTCCTTTTCGTGTTATTCATGGTTTACGTTATTTTTACTTTTTGTGGTACAGATACAAACGGCTGTGACTCCAAGTGGGTCAAATGAAACATCGATTGGAGTAATCAAGTTGAGAGTTGGGGTTCCTAAGAAAGAAGGTTTCGACCAATTTGTGAGAATAGTCTGGGACTCTCATGAAAACAAGTACAATGTTTCTGGATATTGCATCGATGTTTTCAACGCCGTTGTAAACAACTTAACGTTGAAGGTTTCTTTACAAATGGAACCTTTTGTTGTTAATAGATCAGAATCGGCTGGAACATACAACTCACTTGTTAAACAGATCCCAACAAAGTATGATGTTGTGGTGGGCGACATAACAATCACGGCGCATCGTGCACAATTTGTGGATTTCACACTGCCATATACAGAAATGGGGGTTAGAATGTTAGTTCCAATTGTACACGGGAGGCACCAAACCATGTGGATTTTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCACACTCATAATCTCCATGCTTATAGGGGTTGTTATACTCATTATGGAAAGAAACGTACATACACTTCCTCATCAAGACCAAAGTTCGCCCTATCGACAACAACTAACCGCGACGACCATTTTATGGTTTCCAATATCACAAGCCGTTCTTCCTGAAAGACAGGTGGTTGCCAAGAACTGCTCAAGATTTGTGTTGATGGTTTGGTTTTTATTGGCGTTTGTCCTCATGCAAAGTTACACAGCAAACTTGACGTCTATATTGACCGTAGATCAGATGCAACCCAGATTCCTCACTTTGAATGATCTAAGGAAATGGGGTTATTATGTTGGATATCAAACTGGTTCATTCGTTTATGATATATTGGTACAACAATTGAAGTTTGATCCATCCAAGTTGAGGGGATATAATAACATTTATAGCTACCACGATGCTTTAAAGCTTGGAAGCCAAGGTGGTGGTGTCATAGCTATTTTCGACGAAGTGCCTTACCTTAATGCCTACCTTCAAACATTTGGATCCAATTACATCATAGCTGGTCCCACCTTTCGATCCGAAGGATTTGGTTTTGTAACCAAGGCGAATGATACAAAGATTCAAACTATTCCTCCATTTGGACATGTACATGTGGCTATGAGGTCCCCTGAAAAAGCATTCCCTTATAAATCCAATCTTACTGAGCACTTTTCAAGAGCCATCTTGAATGTGACCGAAAATTATGATATAATACATAAGATTGAGGAAAAATATTTTGGGAGAATCGAAGATGTACAAAAGCAGTCTACGCAAGTGTCTTCAGCATCACCAAGTCTTACCTTTCACAGCTTCGCAGGGTTGTTCTTGATCACTGGCATTTCAACCTTTTTGGCGTTAATTGTCTCTGAAACTCTTATTTTGCAAAAGTCCATTTTAAAGATTAAAGAATACACTGAGAGATACTTGTTACGCTCCACAACTTCTACAGAAACGCATGCTCATCCGAACCACCTTGAGGCAACAGAGGAAACAAATTGA 1524 0.3963 MAKSFSCYSWFTLFLLFVVQIQTAVTPSGSNETSIGVIKLRVGVPKKEGFDQFVRIVWDSHENKYNVSGYCIDVFNAVVNNLTLKVSLQMEPFVVNRSESAGTYNSLVKQIPTKYDVVVGDITITAHRAQFVDFTLPYTEMGVRMLVPIVHGRHQTMWIFVKPFSWDLWLSTLIISMLIGVVILIMERNVHTLPHQDQSSPYRQQLTATTILWFPISQAVLPERQVVAKNCSRFVLMVWFLLAFVLMQSYTANLTSILTVDQMQPRFLTLNDLRKWGYYVGYQTGSFVYDILVQQLKFDPSKLRGYNNIYSYHDALKLGSQGGGVIAIFDEVPYLNAYLQTFGSNYIIAGPTFRSEGFGFVTKANDTKIQTIPPFGHVHVAMRSPEKAFPYKSNLTEHFSRAILNVTENYDIIHKIEEKYFGRIEDVQKQSTQVSSASPSLTFHSFAGLFLITGISTFLALIVSETLILQKSILKIKEYTERYLLRSTTSTETHAHPNHLEATEETN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04278 507 SMART GluR_14 39 423 IPR001320 GO:0015276|GO:0016020
Mepo5g04278 507 Pfam Bacterial extracellular solute-binding proteins, family 3 64 368 IPR001638 -
Mepo5g04278 507 FunFam Glutamate receptor 2.7 36 156 - -
Mepo5g04278 507 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 471 IPR015683 -
Mepo5g04278 507 SUPERFAMILY Periplasmic binding protein-like II 32 367 - -
Mepo5g04278 507 Gene3D - 157 298 - -
Mepo5g04278 507 Gene3D - 34 156 - -
Mepo5g04278 507 Pfam Ligand-gated ion channel 369 455 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04278 Mepo-Chr5 55364320 55368034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04278 39 507 Ion Channels AT5G11210 33.404 8.47e-80 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04278 K05387 - tpra:123903997 666.381