Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04244 ATGCATTTTCAAAATCCAAACCCTTCCGAATCGCGCGCCATCGTTCCAGTTCCCGACGAGTTAAAAAATTACGACAACGACACTCTGGCGGGAAAAGCTTCAAAATCTAAGCAGAACAAGGAGCTTGTTCGAACTGCGATGGATGCGGATCACCGTCCGCATCGTGAGATGGTCCGGAGAACAAGAATTTTGTTTGATTCCATTCGTGTGTCGGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAAGTATTTGAAAGCTTCTTCTTTGATAAACCAGACAGAAGAAGTGAATAATAGTAGGGTCCGAAATGACTTGAAAGCTGCTACTTTGATGAACGATCATGGTATGTATTTGTATAATGATGTGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGAGATATTTTTCTCTATAGAAGCGAAATGTGTGTGATTGGTTTACACGGTCAATTACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCAAACCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACAGAATTATCTATTCTGGTCATGGTGATGTGAAGCAGGATCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAACAGGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGCACTTCTAGTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATATTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCAAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCTAGTATGCTTAAGAGAGGCCAATTATGTGATAATCCTATGTATGTCCTTTCTGCTGATATTTCCAATGGGAAGGAAAATATTGGTGTGAGGCTATATAATGACATTGATAGTGATCTCTATCCTATGCAATTTGAGTATCTCCCGAAGGCGGCATTTCCAAAATTCTTGCTTCCTCACAGCATGACGGAGAGGAAAAAGAAGAGGGTGATGGAGTGTTCTGAATGCGTTGATGGATGTGTTTCTTTAATCATGAATGGCAACACTTTTTCTTATAGTAAAAGTGGGATTCTTTTGAAAGGGAGGTCGTTGATTTATGAATGCGGTCCTTTTTGTAGCTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATGCGAGTTCACCGGACTTGTTTTGACTAGGGAGCAAGCGGAAATTTTGACCATGGATGGTGAACAAAACTCTTTGATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGCGATTTGTCGATGATTGATGCTAATCATGTGCATCCCGCATATCGTCCTTTAGATTTTGCATTGGATGTATCAATGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTTTGATCATGGTAATTGGATGTTTCCCCATCTTATGGTATTTGCAATGGAAAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGAGTAGAAGCTGGGTAG 1686 0.3938 MHFQNPNPSESRAIVPVPDELKNYDNDTLAGKASKSKQNKELVRTAMDADHRPHREMVRRTRILFDSIRVSGLLEEENNRKNKKYLKASSLINQTEEVNNSRVRNDLKAATLMNDHGMYLYNDVKIIGPVPGVCIGDIFLYRSEMCVIGLHGQLQAGIDYLHASMSSNGKPIATSVVVSDGYNDDDQGDRIIYSGHGDVKQDQKLERGNLAMVTSMQQEIDVRVIRGFRYEGGTSSTSKVFVYDGLYKIIEYWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCDNPMYVLSADISNGKENIGVRLYNDIDSDLYPMQFEYLPKAAFPKFLLPHSMTERKKKRVMECSECVDGCVSLIMNGNTFSYSKSGILLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEQNSLIIYPNRFLNRSTQEWGDLSMIDANHVHPAYRPLDFALDVSMMRNVASYISHSPTPNVFVQLVLFDHGNWMFPHLMVFAMENIPPMRELSLDHGVEAG 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04244 561 Gene3D SET domain 279 560 IPR046341 -
Mepo5g04244 561 SMART preset_2 302 397 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Mepo5g04244 561 ProSiteProfiles YDG domain profile. 128 270 IPR003105 -
Mepo5g04244 561 ProSiteProfiles Pre-SET domain profile. 353 410 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Mepo5g04244 561 SMART G9a_1 123 274 IPR003105 -
Mepo5g04244 561 Pfam SAD/SRA domain 127 274 IPR003105 -
Mepo5g04244 561 Gene3D - 125 278 IPR036987 -
Mepo5g04244 561 Pfam Pre-SET motif 305 405 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Mepo5g04244 561 ProSiteProfiles SET domain profile. 413 557 IPR001214 GO:0005515
Mepo5g04244 561 SUPERFAMILY SET domain 296 559 IPR046341 -
Mepo5g04244 561 SUPERFAMILY PUA domain-like 109 282 IPR015947 -
Mepo5g04244 561 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 33 556 - -
Mepo5g04244 561 Pfam SET domain 425 557 IPR001214 GO:0005515
Mepo5g04244 561 SMART set_7 413 558 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04244 Mepo-Chr5 54796207 54797892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04244 54 558 Su(var)3-9 homologs AT5G04940 34.725 3.00e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mepo5g04244 SAD_SRA 5.2e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04244 K11420 - mtr:25480975 841.647