Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04228 ATGTATGTTTTTGTTTTGTATGCTAACGATTATCTTGTGTTGAATTTAGATATGGGGAAAATGCAGAAGAGGAAACTAAAGCATCAGCCGCCTACAGGGGCACTTGTTCGTATAGCTAAGGCATCTGGTTTTACATGTGTCTCAGAAATGCTTAGCAAGATGGAAGCTGAAAAATTGGAACTTTCTATGGTCAATAATACTAATGTTGGGCCTATAAAGGAAGATGCTTTGGGAAAGGAGGTTTTAGTAGAAGACAATGATTGCACGACTCATTGGGCTGGAAATGTTTTATTTTCTGATCCTAGTCCTTTATCTTCAAATCATAAAATAAATTGGGATGGCACCATTGTTATTGGTGATAATGATAATGGTAGACTGAATTCCCATATGGAGATAGAACAACTTCAAATACTTGATAATAATTCTATAAGGCCAGAGAGAAAAATAATTGAGGAAGAAATTTCTTTTCCCTCTGGACCATACACTGAAAATGTATTGAACATTGAATTTCAACAAGAAGATGCTGCGAGGGAAATGCAGTTTGTAGATTTTAACACATTGATTGGGAAGTATAAGCAGACTAAGGCTTTGGAGTTACCTAAAGAAGAGGATGTGGAAGAACTTTGTGTGGAAGATGAAGATGAACACAGAGAGAACTCATGTGGTGCATGCGGTGAACAATATGGCCCTGATGAATTCTGGATTTTCTGTGACATTTGTGAAAGGTGGTTGCATGGGAAATGTGTGAATATCACCCCTGTTAGGGCAAAGCATATCAAGATATACAAGTGTCCATCATGCAATAACAAGAGAGCTCGCCCTTGA 825 0.377 MYVFVLYANDYLVLNLDMGKMQKRKLKHQPPTGALVRIAKASGFTCVSEMLSKMEAEKLELSMVNNTNVGPIKEDALGKEVLVEDNDCTTHWAGNVLFSDPSPLSSNHKINWDGTIVIGDNDNGRLNSHMEIEQLQILDNNSIRPERKIIEEEISFPSGPYTENVLNIEFQQEDAAREMQFVDFNTLIGKYKQTKALELPKEEDVEELCVEDEDEHRENSCGACGEQYGPDEFWIFCDICERWLHGKCVNITPVRAKHIKIYKCPSCNNKRARP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04228 274 SMART PHD_3 220 268 IPR001965 -
Mepo5g04228 274 PANTHER CPG BINDING PROTEIN 192 273 IPR045104 GO:0006355|GO:0042393
Mepo5g04228 274 ProSiteProfiles Zinc finger PHD-type profile. 218 270 IPR019787 -
Mepo5g04228 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 269 IPR013083 -
Mepo5g04228 274 Pfam PHD-finger 221 269 IPR019787 -
Mepo5g04228 274 ProSitePatterns Zinc finger PHD-type signature. 221 267 IPR019786 -
Mepo5g04228 274 FunFam PHD finger alfin-like protein 213 269 - -
Mepo5g04228 274 SUPERFAMILY FYVE/PHD zinc finger 212 271 IPR011011 -
Mepo5g04228 274 CDD PHD_AL_plant 221 270 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04228 Mepo-Chr5 54450317 54451594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04228 216 273 Alfin-like Transcription Factor Family AT3G42790 72.414 8.82e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo5g04228 PHD 9.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04228 K26274 - egr:104437986 123.635