LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo5g04227	ATGGCATACTACTTTGGGGCAAGATGTGGGTTTGACAAATCTGACAGGAAGCGCCTTTTCAATATGAAAAATGATATGCCGTCAATATTTGAAGTTGTTACTGGTGAAGAAAAGAAACAAGTAAAGGAGAAGGCTTCAACTTCAAGCCATAATGGCAGCAAATCCAAGTCCAACTCGAAACTGCAACGGGCTATAAAATCTCAGGAGGACTTTTGTCCTATAAGAGAAATTCATCACACACGCCCATCAGAGATGGAAGAACTTTTTGAGGAAGATGAAGATGAAGACGGAGAAAACTCATATGGTGCATGCGGTGAGCAATATGGCCCTAATGAATTCTGGATTTTCTGCGACATTTGTGAGAGGTGGTTCCATGCGAAATGTGTGAATATCACCCCTGCTAGGGCTAAGCATATCGATATATACAAGTGTCCATCATGCAATAACAACAAGAGAGCTCGCCCTTGA	468	0.4188	MAYYFGARCGFDKSDRKRLFNMKNDMPSIFEVVTGEEKKQVKEKASTSSHNGSKSKSNSKLQRAIKSQEDFCPIREIHHTRPSEMEELFEEDEDEDGENSYGACGEQYGPNEFWIFCDICERWFHAKCVNITPARAKHIDIYKCPSCNNNKRARP	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo5g04227	155	MobiDBLite	consensus disorder prediction	46	64	-	-
	Mepo5g04227	155	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	91	149	IPR013083	-
	Mepo5g04227	155	Pfam	Alfin	1	35	IPR021998	GO:0006355\|GO:0042393
	Mepo5g04227	155	PANTHER	CPG BINDING PROTEIN	1	154	IPR045104	GO:0006355\|GO:0042393
	Mepo5g04227	155	FunFam	PHD finger alfin-like protein	93	149	-	-
	Mepo5g04227	155	Pfam	PHD-finger	103	149	IPR019787	-
	Mepo5g04227	155	MobiDBLite	consensus disorder prediction	36	64	-	-
	Mepo5g04227	155	SUPERFAMILY	FYVE/PHD zinc finger	90	151	IPR011011	-
	Mepo5g04227	155	SMART	PHD_3	103	148	IPR001965	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo5g04227	Mepo-Chr5	54445626	54446421	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo5g04227	1	154	Alfin-like Transcription Factor Family	AT3G42790	55.484	8.34e-44	143

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Alfin-like	Mepo5g04227		PHD	6e-10	CL0390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo5g04227	K26274		-	gmx:100170700	193.356