Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04186 ATGGCGGTGGCAACACGAAAAACCCTCTTCACTCTCTCTTCCTCCATCACCTTCCCTTCCCGTTTCTCTCTCTTCAAACTCTCCCAAAACCCATCATCCCTCTTCCCAAAACGCTTCACACCATTCTCTTCTCTCACCACCACACCACAATCTTCACCATCATTGCTATCTGATCCTGATCAAGAGAAACACTCGGTTCTCCTCGAGAAGTTGAGGATAAGACATTTGAAAGGTGGAAGTGGAGGTGGGGGTAAGAATGATGAGAGGGTGGTGAGGAAGGTTGAGGGGGTGAAGAAGAAGAAAGAGGGGGTGTTTGAGGAGGAGGATGGTGGTGGTGTTGTTGGGAGTTTTGAAGGGTTGGGGATTGGGGATGAGGTTATGGGAGCTGTTAGAGAAATGGGTATTGAAGTTCCTACTGAGATTCAGTGTATTGGTGTTCCGGCTGTTTTGGATGGGAAGAGTGTTGTGTTAGGGTCTCATACTGGGTCTGGAAAGACTCTTGCTTATTTGTTACCGCTTGTTCAGTTGCTAAGACGGGATGAGCAATTGAATGGACTAGTGTTGAAGCCCAAGCGTCCCCGAGCTGTTGTGTTATGCCCTACGAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCGAAATTGATAAGTCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAAGAAGAGTCACTTAGTAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATCGAGGAAGGAAATATGGTATACGGTGACATCCAATATGTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATTAAAAAATTCCTGGCCCCATTAAAACATCGCGCTTCGAAACCTGACAGCCTAGGTTTCCAGACTGTTTTGGTTACTGCAACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGCACATCCTCATTACATAAAAAGATTTCTAATGCTCGTCATGATTTTATCAAACTTGCTGGTACTGAGAACAAGCTGGATTCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTGAATTCTAGTCGTGCCGTGGATCACTTTCTTGAAGAAAATCAGATATCTACCGTGAATTACCATGGGGAGGTACCGGCAGCACAAAGGGTTGAAAACCTCAACAAGTTCAAAAGTAACAACGATGATTGCCCCACATTGGTTTGCACAGATTTGGCTGCTAGGGGTCTGGACTTGGATGTTGATCATGTTATCATGTTTGACTTCCCTTTGAATTCAGTGAGCTCCCTCTCCCTTCATTCTACCTTCTTTTTTTAA 1404 0.453 MAVATRKTLFTLSSSITFPSRFSLFKLSQNPSSLFPKRFTPFSSLTTTPQSSPSLLSDPDQEKHSVLLEKLRIRHLKGGSGGGGKNDERVVRKVEGVKKKKEGVFEEEDGGGVVGSFEGLGIGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGLVLKPKRPRAVVLCPTRELSEQVFRVAKLISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLAGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSVSSLSLHSTFFF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04186 467 Gene3D - 84 333 IPR027417 -
Mepo5g04186 467 Pfam Helicase conserved C-terminal domain 358 457 IPR001650 -
Mepo5g04186 467 CDD DEADc 126 325 - -
Mepo5g04186 467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 333 IPR014001 -
Mepo5g04186 467 Gene3D - 334 460 IPR027417 -
Mepo5g04186 467 CDD SF2_C_DEAD 346 457 - -
Mepo5g04186 467 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Mepo5g04186 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 327 IPR027417 -
Mepo5g04186 467 SMART helicmild6 387 454 IPR001650 -
Mepo5g04186 467 Pfam DEAD/DEAH box helicase 139 322 IPR011545 GO:0003676|GO:0005524
Mepo5g04186 467 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 97 457 - -
Mepo5g04186 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 455 IPR027417 -
Mepo5g04186 467 SMART ultradead3 134 343 IPR014001 -
Mepo5g04186 467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 467 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04186 Mepo-Chr5 53821020 53829046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04186 104 454 Eukaryotic Initiation Factors Gene Family AT3G19760 28.451 4.86e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04186 - - psat:127127975 671.774