Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04177 ATGGCAGCAGTTGTTTCATCACCAAAGATCGTTGTTCCAGCGGCTTTGACCGGTGCTGGAAGATTTGAGAATGCTTCGTTGTACGTTGGCGATCTTGAAGGGTACGTCAATGAGGCTCAACTTTATGACCTGTTCAGTCAGATTGCCCCTGTGGTTTCTGTTAGGGTTTGCAGAGATCAGATGATGCAGTCTTCTCTTGGTTACGGTTATGTCAACTTCTCCAACGCTCGTGATGCTGCTAATGCGATGGAGAATTTGAACTATGTTCCTCTGAATGGAAAACCCATTCGTATTATGTTTTCTCATCGAGACCCTCTCATTCGGAAAACTGGATTTGCAAATCTGTTCATTAAGAATCTAGAAACATCAATAGATAACAAGGCATTGCATGAAACTTTTTCTGTTTTTGGACATGTGCTTTCTTGCAAGGTTGCTATGGATAGCAATGGTCAATCTAGGGGATATGGCTTTGTACAATTTGACAATGATAAGTCTGCAAAAAATGCTATTGAAAAGTTGGATGGCATGCTGATGAATGATAAGAAAGTTTATGTAGGGTATTTTGTTCGGCGTCAAGAAAGGTCATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAATCATATACTGATGAGGACCTGAAGCAGCTTTTCAACACTTTTGGTGTAATAACAAGTGCTGTGATAATGAAACATGAGAATGGTAACTCTAAATGTTTTGGTTTTGTGAATTTCCAAAGCTCAGATTCAGCAGCTACTGCTGTTGAGAAGTTGAATGGGAGCACAACTAATGATGGGAAGGTTTTATTTGTCGGGAGGGCTCAGAAAAAATCGGAAAGGGAGGCAGAGTTGAAAGCTTTGTTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTACAAGCTGCCAATTTATATTTGAAAAACATTGATAAGAGTCTTAATGAAGAAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTCTGATGCTCGTGGCCGCAGCAAGGGCGTCGGTTTTGTTGCTTTTACCACACCTGAGGAAGCGACCAAAGCTATCAATGAAATGAATGGGAAGATGATTGGACAGAAGCCCTTATATGTTTCTGTGGCCCAACGCAAAGAAGAAAGGAAAGCTCAATTGCAGGCTCATTTTTCTGCAATTCAAGTATCGGGTGGAAATGCTGGATACCATTCAAGTGTACAAAGACTTGCTCCGCAACAGTTTTACTATGGGCAAGATACACTTGGTCTCATGTCGCCTCAGCCAAACGGATACGGTTTCCAGCCACAGTTCATGTCAGGCGTGGGAACTGGCTTTGTTACTCCAAATTACATCCTGCCAAATCACCTTCAGAGGCAGGGGCATCTAGGGAATAGGATGGGTGGGCGTCCAGCTGGTAACTTCCAGCAAATGCGACCTCATAACCCGAACCAAGGGTCTAAATACAATGGTCAAAATGGCGTGGATATGTCTGTAGTTGCTGGAAGTCAAATGATGGATCCATCTGCAAGTACTGCAACCTCCAGTGGCAATCAGCATCATGGTCCGTTGTCTAACAACTCACTTGCTTCAGCTTTGGCTTCTGCTTCTCAAGAAAATCAACATCGGATGCTGGAAGAACATTTACGTCCTCTGGTGAGTCGTCTTACACCAAACAATCAGACGGCAAAGGTGACAAGAATGTTGCTTGAAATGGATCAGTCAGAAGTCATCCATCTGATTGAGTCACCTGAGGAGCTGAAGATGAAGGTGTCTGAAGCGATGCGGTTCCTTCGTGATGCTTCACAAGGTCCTGCAGTTGGTGATCAGATCGGCTCTTAA 1848 0.4275 MAAVVSSPKIVVPAALTGAGRFENASLYVGDLEGYVNEAQLYDLFSQIAPVVSVRVCRDQMMQSSLGYGYVNFSNARDAANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGHVLSCKVAMDSNGQSRGYGFVQFDNDKSAKNAIEKLDGMLMNDKKVYVGYFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFNTFGVITSAVIMKHENGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKALFEQEKLKRYEKLQAANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEATKAINEMNGKMIGQKPLYVSVAQRKEERKAQLQAHFSAIQVSGGNAGYHSSVQRLAPQQFYYGQDTLGLMSPQPNGYGFQPQFMSGVGTGFVTPNYILPNHLQRQGHLGNRMGGRPAGNFQQMRPHNPNQGSKYNGQNGVDMSVVAGSQMMDPSASTATSSGNQHHGPLSNNSLASALASASQENQHRMLEEHLRPLVSRLTPNNQTAKVTRMLLEMDQSEVIHLIESPEELKMKVSEAMRFLRDASQGPAVGDQIGS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04177 615 MobiDBLite consensus disorder prediction 479 495 - -
Mepo5g04177 615 CDD RRM4_I_PABPs 305 381 - -
Mepo5g04177 615 MobiDBLite consensus disorder prediction 462 495 - -
Mepo5g04177 615 SUPERFAMILY PABC (PABP) domain 477 604 IPR036053 GO:0003723
Mepo5g04177 615 Gene3D - 20 107 IPR012677 -
Mepo5g04177 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Mepo5g04177 615 SUPERFAMILY RNA-binding domain, RBD 302 406 IPR035979 GO:0003676
Mepo5g04177 615 MobiDBLite consensus disorder prediction 509 529 - -
Mepo5g04177 615 SUPERFAMILY RNA-binding domain, RBD 24 194 IPR035979 GO:0003676
Mepo5g04177 615 SUPERFAMILY RNA-binding domain, RBD 194 283 IPR035979 GO:0003676
Mepo5g04177 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 381 IPR000504 GO:0003723
Mepo5g04177 615 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 601 IPR006515 GO:0003723
Mepo5g04177 615 Gene3D - 288 393 IPR012677 -
Mepo5g04177 615 Gene3D - 194 287 IPR012677 -
Mepo5g04177 615 FunFam Polyadenylate-binding protein 193 286 - -
Mepo5g04177 615 Gene3D - 525 605 - -
Mepo5g04177 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mepo5g04177 615 FunFam Polyadenylate-binding protein 108 192 - -
Mepo5g04177 615 CDD RRM2_I_PABPs 111 186 IPR045305 -
Mepo5g04177 615 Gene3D - 108 193 IPR012677 -
Mepo5g04177 615 SMART poly_2 539 603 IPR002004 GO:0003723
Mepo5g04177 615 PANTHER RNA BINDING PROTEIN 24 88 - -
Mepo5g04177 615 SMART rrm2_1 305 377 IPR003954 GO:0003676
Mepo5g04177 615 SMART rrm2_1 201 273 IPR003954 GO:0003676
Mepo5g04177 615 SMART rrm2_1 114 186 IPR003954 GO:0003676
Mepo5g04177 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mepo5g04177 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 605 IPR002004 GO:0003723
Mepo5g04177 615 FunFam Polyadenylate-binding protein 287 392 - -
Mepo5g04177 615 FunFam Polyadenylate-binding protein 6 107 - -
Mepo5g04177 615 Pfam Poly-adenylate binding protein, unique domain 535 599 IPR002004 GO:0003723
Mepo5g04177 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mepo5g04177 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 374 IPR000504 GO:0003723
Mepo5g04177 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Mepo5g04177 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 267 IPR000504 GO:0003723
Mepo5g04177 615 SMART rrm1_1 201 274 IPR000504 GO:0003723
Mepo5g04177 615 SMART rrm1_1 305 377 IPR000504 GO:0003723
Mepo5g04177 615 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mepo5g04177 615 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mepo5g04177 615 CDD RRM3_I_PABPs 199 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04177 Mepo-Chr5 53575251 53579808 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04177 24 601 Eukaryotic Initiation Factors Gene Family AT1G22760 55.167 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04177 K13126 - gmx:100783163 788.489