Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04175 ATGAAAAGAAGAATCACAAAGCTTCTAAGCCTTTCATTTTCATCTCTACACTCTCAAATTCATCACCATACACTCTCAAAATCACTTCCACCTACTTCTTCTTTCTCAACAATTTCCAACTCTCAAAGGGATTCACTCATTCTCCAACAGTTCAAAGAAAGAAAACTCAAAGGGTCATCAAATCCAGTTTCAAATTCAAGTTTTGATACCAATGATAAGAAAATGGTCCAAAAGGGTTTGAAAAATAATGATACTATGGTGGTTGGTGGCTTTAAGGAGTTGGGTTTGAGGGATGAGCTTGTTGAGGTGATGGAAGAGATTGGTGAATTTGTTCCAAGTGAGTTACAATGTATTGTTATTCCAACTATTTTGGATGGGAAGAGTTTGTTGTTGAGTTCACCTGCTCAGAATGATAGGACTTTGGCTTACTTGTTGCCCCTTATCCAGCTGCTAAGACGAGATAGAGAGTTGCTTGGTTCAAATTCAAAGCATCCTCTGGCCGTCGTGCTTTGTGCTTCAGAGGAGAAAGTTGAACAGTGCTTTAATGCTGCAAGATACATCATTCATAATGCAGAATTGAAGTCTGCAAAGAATTCTGCTTCATCCGATAACGAAAAGTCAAATTCCTCAATTGGCTTAATGATTGGAACTCCTTGTGAAATTCTTCAATACATTGAAGAGGGGACTGTTGTTCCTGCTGAATTAAAATATTTGGTATTGGACGAAGCGGATTCCATGCTTGGTAGCAGCAACCTTGGTGCTGAAATTAATAAAATTATCAGGCCATTACAACATCATGTGTCAAAACTCAGTGTCAAAAGATTGCAAACAATTATGGCAATTTCAACTATAGCTGAGGTTTTGGGTGAAAACTCGCCGATTGTGAAACGTCTTGAGCGTGATCATGCCGGAAATATTTCTGCATTGTGTGTAGAAGTGGAGGAAACAGAAGTTTTTCATTTGACAGAGTCTTTGGATGCTCTTAAGAAAAAATTGGAAGAGGCCATGAATACCCTTTAG 1020 0.3843 MKRRITKLLSLSFSSLHSQIHHHTLSKSLPPTSSFSTISNSQRDSLILQQFKERKLKGSSNPVSNSSFDTNDKKMVQKGLKNNDTMVVGGFKELGLRDELVEVMEEIGEFVPSELQCIVIPTILDGKSLLLSSPAQNDRTLAYLLPLIQLLRRDRELLGSNSKHPLAVVLCASEEKVEQCFNAARYIIHNAELKSAKNSASSDNEKSNSSIGLMIGTPCEILQYIEEGTVVPAELKYLVLDEADSMLGSSNLGAEINKIIRPLQHHVSKLSVKRLQTIMAISTIAEVLGENSPIVKRLERDHAGNISALCVEVEETEVFHLTESLDALKKKLEEAMNTL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04175 339 Coils Coil 318 339 - -
Mepo5g04175 339 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 284 - -
Mepo5g04175 339 Gene3D - 289 339 - -
Mepo5g04175 339 Gene3D - 43 288 IPR027417 -
Mepo5g04175 339 Pfam DEAD/DEAH box helicase 115 280 IPR011545 GO:0003676|GO:0005524
Mepo5g04175 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 284 IPR027417 -
Mepo5g04175 339 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 302 IPR014001 -
Mepo5g04175 339 SUPERFAMILY PABC (PABP) domain 286 339 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04175 Mepo-Chr5 53563016 53566496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04175 270 339 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 6.02e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04175 - - mtr:120577871 471.855