Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04171 ATGGCGATTGTTTCATCACCTAAAACAGCGGTTCCGGCTGTATTGTTGAACGGAACTGGACAGTTAGAGAATGCTTCTCTGTATGTTGGTGATCTTGAAGGGAAGGTTAACGAGGCACAGCTTTATGAACTGTTCAATCAGATTGGTCAGGTTGTTTCCATCAGGGTTTGTAGGGATCAGACTATGCGGTCCACTCTTGGCTATGCTTATGTGAATTTCTCCAATGCTCGTGATGCTGCTAATGCGATAGAACATTTGAATTACACTCCTTTGAATGGGAAGCCAATTCGTATCATGTTTTCTCATCGTGATCCTACCATCCGGAAAACTGGATTTGCAAATGTGTTCGTCAAGAATCTTGACACATCAATAGATAACAAGGCATTGCATGATAGTTTTGTTACATTTGGAACTGTACTTTCTTGCAAGGTGGCTCTTGATCGCAATGGTAAATCTATGGGATATGGTTTTGTACAATATGACAATGACGAGTCAGCAAAGTGTGCCATTGAAAAATTAGATGGCATGTTGATAAAGGATAAGAAAGTTTATGTAGCGTATTTTATTCGGCGTCAAGAAAGATCGGAAAATGGATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTTGGAAACAGATACTGATGAGGACCTTGAAAAGCTTTTCAGAACATATGGTGCAATAACAAGTGCTGTGATCATGAAAGATGAGAATGGAAACTCTAAATGTTTTGGTTTTGTGAATTTTCACAGCCCAGATTCAGCAGCTGCTGCAGTTGAGAAGCTGAATGGCACTACAACCAATGATGGGAAGGTTTTATATGTGGGAAGGGCTCAAAGGAAATGTGAAAGGGAGGCAGAGTTGAAAGCTAAGTTTGAACAAGAAAAGATAAAAAGATATGAAAAATTACAAGGTGCAAATTTATACCTTAAAAACCTTGATGACAGTCTTAATGATGAGAAACTGAAGGAGATGTTTTCTGAGTTTGGAACAATAACTTCTTGCAAGGTAATGTTTGATGCTCATGGCCATAGCAAGGGCTTCGGTTTTGTTGCATTTTCCACTTCAGAGGAAGCGAGTAAAGCTATTAATGGAATGAGTGGAAAGATAATTGGACAGAAGCCCTTATATGTTGTTGTGGCTCAACGCAAAGAAGATAGGAAAACTCGTTTGCAGGCTCAATTTTCTCAAATCAATGCTTCGGGTGGAATCACATCTTTTCCTGCAAGAATTGCTGGATATCATCAAAGTGCTCCAACACTTGCTCCTCAACAATTGTATTATGGTCAAGGTACACCTCGTCTCATGCCGCCTCAACCAGCTGAATATGGATACCAGCAACAATTCATACCAGGTATGCGATCTGGAGTTGCTCCAAATTACATCATGCCATACCACCCTCAGAGGCACGGTCATACCGGACATAGGATGCCTCCAGTTGGTAACTTCCAACAAGTGCAGCAGAACCAGGTGCTACCTCGCAACTCGGACCAAGGGTTTAGATATAATGGTCAAAATGGAGTGGATCCATCTGCTGTTTCTGAAGGTCAAATGATAGATCCATCCATACAAAATCACGGTGCCTTGTCTAATAATTCACTTCCCTCAACTTTGGCTTCTGCTACTCATGAAAATCAAAACCGGATGTTGGGTGAACAGTTATATCCTCTTGTGGGTCGTCTTACACCAAACAATCAGACAGCCAAGGTGACAGGAATGTTGTTGGAATTGGACAAGTCAGAGGTTATCCATCTGATTAAGTCACCTGAAGAATTGAAGATGAAAGTCTCTGAGGCAATGCAAGTCCTTCGCTTAGTTTCATTGGGTCCTGCAGATCATTATGATCAGCTCGGCTCCTAA 1863 0.4112 MAIVSSPKTAVPAVLLNGTGQLENASLYVGDLEGKVNEAQLYELFNQIGQVVSIRVCRDQTMRSTLGYAYVNFSNARDAANAIEHLNYTPLNGKPIRIMFSHRDPTIRKTGFANVFVKNLDTSIDNKALHDSFVTFGTVLSCKVALDRNGKSMGYGFVQYDNDESAKCAIEKLDGMLIKDKKVYVAYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLEKLFRTYGAITSAVIMKDENGNSKCFGFVNFHSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELKAKFEQEKIKRYEKLQGANLYLKNLDDSLNDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRLQAQFSQINASGGITSFPARIAGYHQSAPTLAPQQLYYGQGTPRLMPPQPAEYGYQQQFIPGMRSGVAPNYIMPYHPQRHGHTGHRMPPVGNFQQVQQNQVLPRNSDQGFRYNGQNGVDPSAVSEGQMIDPSIQNHGALSNNSLPSTLASATHENQNRMLGEQLYPLVGRLTPNNQTAKVTGMLLELDKSEVIHLIKSPEELKMKVSEAMQVLRLVSLGPADHYDQLGS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04171 620 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mepo5g04171 620 SMART rrm1_1 204 277 IPR000504 GO:0003723
Mepo5g04171 620 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mepo5g04171 620 SMART rrm1_1 308 380 IPR000504 GO:0003723
Mepo5g04171 620 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 531 609 IPR002004 GO:0003723
Mepo5g04171 620 Pfam Poly-adenylate binding protein, unique domain 539 604 IPR002004 GO:0003723
Mepo5g04171 620 FunFam Polyadenylate-binding protein 5 107 - -
Mepo5g04171 620 Gene3D - 194 287 IPR012677 -
Mepo5g04171 620 SUPERFAMILY RNA-binding domain, RBD 304 400 IPR035979 GO:0003676
Mepo5g04171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Mepo5g04171 620 CDD RRM4_I_PABPs 306 384 - -
Mepo5g04171 620 Gene3D - 106 193 IPR012677 -
Mepo5g04171 620 SUPERFAMILY RNA-binding domain, RBD 198 286 IPR035979 GO:0003676
Mepo5g04171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Mepo5g04171 620 Gene3D - 529 607 - -
Mepo5g04171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mepo5g04171 620 FunFam Polyadenylate-binding protein 194 289 - -
Mepo5g04171 620 CDD RRM2_I_PABPs 111 186 IPR045305 -
Mepo5g04171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Mepo5g04171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 270 IPR000504 GO:0003723
Mepo5g04171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Mepo5g04171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mepo5g04171 620 SMART poly_2 543 607 IPR002004 GO:0003723
Mepo5g04171 620 Gene3D - 8 105 IPR012677 -
Mepo5g04171 620 Coils Coil 276 304 - -
Mepo5g04171 620 FunFam Polyadenylate-binding protein 290 395 - -
Mepo5g04171 620 SUPERFAMILY PABC (PABP) domain 459 605 IPR036053 GO:0003723
Mepo5g04171 620 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 605 IPR006515 GO:0003723
Mepo5g04171 620 Gene3D - 288 393 IPR012677 -
Mepo5g04171 620 SMART rrm2_1 308 380 IPR003954 GO:0003676
Mepo5g04171 620 SMART rrm2_1 26 99 IPR003954 GO:0003676
Mepo5g04171 620 SMART rrm2_1 114 186 IPR003954 GO:0003676
Mepo5g04171 620 SMART rrm2_1 204 276 IPR003954 GO:0003676
Mepo5g04171 620 CDD RRM3_I_PABPs 202 282 - -
Mepo5g04171 620 PANTHER RNA BINDING PROTEIN 25 88 - -
Mepo5g04171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mepo5g04171 620 SUPERFAMILY RNA-binding domain, RBD 24 194 IPR035979 GO:0003676
Mepo5g04171 620 FunFam Polyadenylate-binding protein 108 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04171 Mepo-Chr5 53503040 53508102 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04171 24 614 Eukaryotic Initiation Factors Gene Family AT1G22760 54.589 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04171 K13126 - gmx:100783163 836.254