Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04038 ATGTCTCACTTATATAAGTGGGGAGATGTCATATTAGGAGAGTCTATCTCATTTAACATTTTGCTGGAATTCGTAAACCCTAGTTTGAGTGGCAGAACAATCACAATTCACAAACTGAGTTCCGGCGAATTGGGCTGCATTTACGCCACCTTGATCCTCCACGACGATGGAATTCCAATCACCGCGGAGAAGATCGGCACTTTGTTGAAGGCTGCTAACGTCACTGTTGAATCCTATTGGCCAAGCCTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGATGATCTCGTTTTGAATTCCGGCGCTGTTGGTGGTGCCGCTGTTGCCGTATCTGCACCTTCTGCTGGTGGTGGAGCCACAGCAGCAGCCGAACCTGCCGCCGTTGAAAAGAAGGAGGAAGCCAAGGAAGAAAGTGACGATGACATGGGCTTTAGTTTGTTTGACTAA 447 0.4787 MSHLYKWGDVILGESISFNILLEFVNPSLSGRTITIHKLSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVLNSGAVGGAAVAVSAPSAGGGATAAAEPAAVEKKEEAKEESDDDMGFSLFD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04038 148 Hamap 50S ribosomal protein L12 [rpl12]. 44 148 IPR027534 GO:0003735|GO:0005840|GO:0006414
Mepo5g04038 148 Gene3D - 39 101 IPR038716 -
Mepo5g04038 148 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 40 148 - -
Mepo5g04038 148 Pfam 60s Acidic ribosomal protein 60 147 - -
Mepo5g04038 148 MobiDBLite consensus disorder prediction 126 142 - -
Mepo5g04038 148 MobiDBLite consensus disorder prediction 112 148 - -
Mepo5g04038 148 FunFam 60S acidic ribosomal protein P1 38 101 - -
Mepo5g04038 148 CDD Ribosomal_P1 43 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04038 Mepo-Chr5 50832679 50835194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04038 39 148 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.637 1.38e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04038 K02942 - rcu:8269526 129.028