Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03973 ATGGATCCTACACCAAGCCGCACACACAATCCATCTTATGTTTCCAAAAGCACAAGGATGAGAATTATTTATTATGATCCTTATGCAACGGATTCATCATCAGATGAAAAGAATCATTATGTAAAGGAACCAATGAAGAGGAAGAGAGTTGTGCATGAATTTGCAATACCTAATCTTCCTGATGACATTGTTTGTCTTAAAGAAACAATGACCAATAAGAATAAGATTTGTGCAAAACCAACACCTCTAGTAAAACAACCTTCTTCCAAATGTAGAGGTGTTCGAATGAGGAAATCGGGTAACTGGGTTGCAGAAATTCGTAATCTGATTAAAGGGACGCGTGAATGGTTGGGAACTTTCAACACCACAAAAGAGGCTTCAAAAGCGTATGAAGGTAAATTTTTTGAATTTGAAGCGTATGAGAAGAGGAACAAAGGCTTCAGCAATGTAGTTTCTACGAGTGGTATGTCACATGCATCTTTATCTTCGCTCAAATCGGTTAATTGTGTTTACAATTTGATTGAGTGTGGTAAGATTTCAAGTAATCAACCTATTGTTGAGATTAATCCTTTGGAGGGTAAATTTGTGGAACAAAATGTGCCTTATATAAGTCCTTTGGAAGTGATGCAACAATTGGATGTTGTTGGAAGTTTGAATTTGTCTCCGTTTGAATTGGATTGGTTACCATTTGATGGTTTGGGACAGGTCTTGGATGATATTGATTGCCTTGATGACCTTCAATTTTGTGACTTTGATAAGAATGGATCAATTGATCTTTCAGATTTCAATTTTGGTGCTGAATTTGTTGATGATGAAGAGATTGATAATTGGATTGAAGAACTCTCCAATACACCGGGTCCATAA 864 0.3646 MDPTPSRTHNPSYVSKSTRMRIIYYDPYATDSSSDEKNHYVKEPMKRKRVVHEFAIPNLPDDIVCLKETMTNKNKICAKPTPLVKQPSSKCRGVRMRKSGNWVAEIRNLIKGTREWLGTFNTTKEASKAYEGKFFEFEAYEKRNKGFSNVVSTSGMSHASLSSLKSVNCVYNLIECGKISSNQPIVEINPLEGKFVEQNVPYISPLEVMQQLDVVGSLNLSPFELDWLPFDGLGQVLDDIDCLDDLQFCDFDKNGSIDLSDFNFGAEFVDDEEIDNWIEELSNTPGP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03973 287 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 Pfam AP2 domain 90 131 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 SUPERFAMILY DNA-binding domain 89 137 IPR016177 GO:0003677
Mepo5g03973 287 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 Gene3D AP2/ERF domain 90 144 IPR036955 GO:0003700|GO:0006355
Mepo5g03973 287 PIRSF PTI6 217 278 IPR017392 GO:0003700
Mepo5g03973 287 PIRSF PTI6 5 181 IPR017392 GO:0003700
Mepo5g03973 287 ProSitePatterns EF-hand calcium-binding domain. 250 262 IPR018247 -
Mepo5g03973 287 CDD AP2 89 137 IPR001471 GO:0003700|GO:0006355
Mepo5g03973 287 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03973 Mepo-Chr5 49505363 49506226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03973 19 265 AP2-EREBP Transcription Factor Family AT1G68550 34.559 1.65e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g03973 AP2 2.7e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03973 - - mtr:25494767 247.284