Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03972 ATGGTGAAACCAATATCTATATCTCTAACCCACCATCTCCATTTCCTAACAACAACCTCTTCCAGATTCTTCAACCCATTCTCGACTCTCCGTTTCTTCTCCACAACCCCATACCCTCTTCAATACGAACTCATCATCAACCGTCCCAATCTCCCTAAACCCACTCGAACCGCTAAACCCTCTGAACCAACCCCACCTCAGAACTCTTCCCTCCAATCCTGGGCCAACGATAAATTAGCCACTCAACCGGTATCAAACCGACCCGGTTCGTCAAAATTCGAACTTGACGATCACACTCTTGATAAATCCAAGAGGAAATACTATAACAAACGGAGGAAGAGAATGTATGGGTCTGATTCTGATGATGATCATCGTCGTAACGAGGAACAATTGGTGGAGATGATACCTCAAGTGGTGGAGTTGAGGACTTTGCATAAGAGGGAAGAGGAATTGTATATGTATGATGCTTTTTGTTATCCTTGGGAGAAAGATAAGCATTATAAAATGGTGTATCAGTTGGAGAAAAAGTATTTTCCTAATCAGTGTTTGGATCAGGCTTTTTTGAAACCTGGTCAATCTAATTGTTCATATGCTAGTTATACTAATTCAAATGCTAATTCGAATGCGAATACTAGGGTTAGGAACATGAAAGTTGGAGTTTTTAGGGAGAATAAGGAGGTTGTTGATAATGATAAGTTGGTGTTTTTTGATGAGAATGGGAAAGACGATGATCGTAGAAATGCAAGTTCAAGTTCGAATGAGAATGCGAATGCTAGGGTTAAGAGCAAGAAAGTTGGTGTTTTTGGTGTTGGGGGGAAGAAAGATGAGGTTGGTGATGGTGATGATAAGTTGATGTTTTTTGAGGAGAATGAGAAAGGGGTGGAAAGAGAAAAGGAAAAGGGGAAGAGGGGTGTGGATAGTAAAGATGTTAGTGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAATGTGAAGAAGGAGGTTGAAGTTGTTGAGCCGTTTTTTAGTTCGAGGAGGACTGGACTTCCTCCTGTTTGGGATAGTTCGCATGGGACTGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGTCGCCTTGTCAAAGTGAAAAAGGTTGGACATGCCGGAACTCTCGATCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACGAAACTGGTGGATAGATACCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCACCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGTTGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACGTGTTCTAAAGGGACATATATTCGATCACTCTGTGCGGATTTTGGGAAGGCTCTTGGCAGTTGCGCCCACTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1713 0.4191 MVKPISISLTHHLHFLTTTSSRFFNPFSTLRFFSTTPYPLQYELIINRPNLPKPTRTAKPSEPTPPQNSSLQSWANDKLATQPVSNRPGSSKFELDDHTLDKSKRKYYNKRRKRMYGSDSDDDHRRNEEQLVEMIPQVVELRTLHKREEELYMYDAFCYPWEKDKHYKMVYQLEKKYFPNQCLDQAFLKPGQSNCSYASYTNSNANSNANTRVRNMKVGVFRENKEVVDNDKLVFFDENGKDDDRRNASSSSNENANARVKSKKVGVFGVGGKKDEVGDGDDKLMFFEENEKGVEREKEKGKRGVDSKDVSEKKVEEFFKGLNVKKEVEVVEPFFSSRRTGLPPVWDSSHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKLYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKTYL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03972 570 Gene3D Pseudouridine synthase 347 569 - -
Mepo5g03972 570 Pfam tRNA pseudouridylate synthase B C-terminal domain 523 566 IPR032819 -
Mepo5g03972 570 SUPERFAMILY Pseudouridine synthase 352 565 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo5g03972 570 CDD PseudoU_synth_EcTruB 353 564 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo5g03972 570 Pfam TruB family pseudouridylate synthase (N terminal domain) 372 522 IPR002501 GO:0006396
Mepo5g03972 570 FunFam tRNA pseudouridine synthase B 347 569 - -
Mepo5g03972 570 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 176 568 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo5g03972 570 MobiDBLite consensus disorder prediction 104 125 - -
Mepo5g03972 570 MobiDBLite consensus disorder prediction 49 72 - -
Mepo5g03972 570 NCBIfam tRNA pseudouridine(55) synthase TruB 352 561 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo5g03972 570 Hamap tRNA pseudouridine synthase B [truB]. 350 570 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo5g03972 570 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03972 Mepo-Chr5 49497835 49504666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03972 353 544 NAC Transcription Factor Family AT3G57150 32.812 6.31e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03972 K03177 - csin:114300507 633.639