Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03963 ATGGATATTCACAGAAAAAACAAGGCTTGTGCAGCCTGCAAATATCAAAGAAGAAAGTGTACTCCAGATTGCCCTTTAGCTCCTTATTTACCAGCCGATAAACCAAAAATGCTCGCCAATGCTCATCGTTTGTTTGGTATTTCCAACATGGTGAAGACGCTAAAATCTATTGATGATGATCATCATAAAGATGAAGCAATGAAGTCGATTATTTTTGAGTCGGAAATGCGTGCAAGATTCCCAAGTCATGGATGTCTTGGTCTTATTATGGAGTATCAAGATATGATAATTGAGTCTATGAAAGAGTTAGATCATGTAAAACAGTTACTAAATTTGTGTAAGCTATCACATCAACAAAATCTTCCAAGTTTCTCTTCATTGGATCATTCTACTAGCTCTTCAATTCCAATATTTAACAATGTTGGTGAAGTTCCTTATTATGATCATAAATAG 453 0.3488 MDIHRKNKACAACKYQRRKCTPDCPLAPYLPADKPKMLANAHRLFGISNMVKTLKSIDDDHHKDEAMKSIIFESEMRARFPSHGCLGLIMEYQDMIIESMKELDHVKQLLNLCKLSHQQNLPSFSSLDHSTSSSIPIFNNVGEVPYYDHK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03963 150 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
Mepo5g03963 150 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 123 - -
Mepo5g03963 150 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03963 Mepo-Chr5 49438383 49438835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03963 9 114 AS2 family AT3G47870 54.717 2.83e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo5g03963 LOB 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03963 - - tpra:123910294 187.193