Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03944 ATGGAATCACCCAAAAACGAACACATCATTGGAACCGGAGGTGAACAAAACGACGTCGGTAGAAGCTATGAACACGAACATGAACAACAGCATCATAACTCTCAATCCCTTACCGGTGATGGTGCTAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACAACCATTGCTCAATTTATCAAGCACTTCGGTAAATATGGTGAGATTACTGATTCCGTCATCATGAAGGACAGGAAAACTGGACAGCCTCGTGGATTTGGCTTTATTACTTATGCTGATCCATCTGTGGTTGATAAAGTCATCGAGGACTCTCATATCATCAACAGCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGATTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGTGACCACTCTACTAATCGTTCCCGTGGCTTTGGGTTTGTCACCTTTGACACTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGGCAAATGCACCACCTCCATCATCCAAGCGCTACAATGACTCAAGGTCTTCATACGGCAGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGATTTGGTGGTGTTGGGGGTGGTTACAGCAGGTCTGGCAGTGCTTATGGTGGTAGGGGTGGTCCGTATGGAGGTTATGGAAGTGAGTTTGCTGGGTATGGTGGATATGCTGGAGCAATGGGGGGACCCTACAGAGGAGATCCTTCTCTAGCATATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCCTAGTGGGTATGGCGGACTTGGTGAGAGTTATGGGGCATATGGTGGTGCTGGTGCAGGTGCTGCTGCTGGCGGAGGTGGTTCTTCTGGTGCTGGTGCATATCAAAGTGGCTATGATGCCAGCCTTGGCGGTGGATATGGAGGAGCTGCTAGTGGAGCTTCCTTCTATGGAAGCAGAGGTGGATATGGTGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1152 0.4661 MESPKNEHIIGTGGEQNDVGRSYEHEHEQQHHNSQSLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPSSKRYNDSRSSYGSGGYGDAYDGFGGGFGGVGGGYSRSGSAYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLAYAGRYGGSFSRGYDPSGYGGLGESYGAYGGAGAGAAAGGGGSSGAGAYQSGYDASLGGGYGGAASGASFYGSRGGYGGAGRYHPYGR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03944 383 Gene3D - 133 216 IPR012677 -
Mepo5g03944 383 MobiDBLite consensus disorder prediction 1 42 - -
Mepo5g03944 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 383 - -
Mepo5g03944 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Mepo5g03944 383 SUPERFAMILY RNA-binding domain, RBD 123 222 IPR035979 GO:0003676
Mepo5g03944 383 MobiDBLite consensus disorder prediction 208 229 - -
Mepo5g03944 383 MobiDBLite consensus disorder prediction 19 33 - -
Mepo5g03944 383 FunFam Heterogeneous nuclear ribonucleoprotein 1 44 126 - -
Mepo5g03944 383 SMART rrm1_1 134 207 IPR000504 GO:0003723
Mepo5g03944 383 SMART rrm1_1 46 117 IPR000504 GO:0003723
Mepo5g03944 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 121 IPR000504 GO:0003723
Mepo5g03944 383 Gene3D - 14 129 IPR012677 -
Mepo5g03944 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Mepo5g03944 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Mepo5g03944 383 SUPERFAMILY RNA-binding domain, RBD 36 123 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03944 Mepo-Chr5 49274716 49278774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03944 45 201 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 9.97e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03944 K12741 - gmx:100793209 423.32