Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03909 ATGGGACGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCCTGTACGCTCCCAACCTTGAAGGCCAAGTATATGTTGAACCTGAAACATGGCCTAAAGACAAAAGAGAGGTACAAAGAATTCTTCAAAAGTACTATGAGACAACAATTGATAGGCATCCTAAGACCTATGATGTTCAAGAATATTTTAAGGAGAGAATGAAAAAAGTTGAATTAGAGATTTACAAAGTGCGTAAAGAGAGGCTAAAGATGAAGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGATATGAACAATTGAAGTCATTTGTTAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAGATGAATATGCGGAAAGATGAATCGCACAAGGTCAATAACCTTATTAGTTCTCCTTACTTGACCTCAAATTCAGGTACCAACTTCAGTCTCATTCATACCAACATGTCTCAAGGGAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCTTAGGGTTTTGGCCAATTCAATTGGGACAAAGCTCTCAACCTTCTCTTATGGTTTCCAGTGCACCAAGCTCCTACTATGTAGAGTCTGAGGCGGGTAGATACTGCCCTTGCAAGCATATTGACGCTAATTGGAGCCATCAGGTTGATGCTAATGTTACGTATGATCCCAAAATCGATATGAAGAAGAAGGATGAAGCTGAAAATGATAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCAAATCCTATTGCTATGCCTACTCCTCCTTTTCAGAACCTTGCAAACCTATCCCATGAATATCTGCTTTATGGATCCTATGACATAGATAGTATTCAAGCTCAACTGTTCAACTCCACGAATGGAACGAAGTAG 996 0.3705 MGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQVYVEPETWPKDKREVQRILQKYYETTIDRHPKTYDVQEYFKERMKKVELEIYKVRKERLKMKYPTWDESYNSFGYEQLKSFVRFLDSKLDACDQKMNMRKDESHKVNNLISSPYLTSNSGTNFSLIHTNMSQGKIYSPLMNICDKNPLGFWPIQLGQSSQPSLMVSSAPSSYYVESEAGRYCPCKHIDANWSHQVDANVTYDPKIDMKKKDEAENDKNLPSYYYNGNAMIMQSNPIAMPTPPFQNLANLSHEYLLYGSYDIDSIQAQLFNSTNGTK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03909 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Mepo5g03909 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Mepo5g03909 331 CDD MADS_SRF_like 2 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo5g03909 331 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g03909 331 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03909 Mepo-Chr5 48954073 48955068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03909 1 144 Type I MADS-box Gene Family AT5G55690 40.000 4.72e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g03909 SRF-TF 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03909 - - tpra:123913303 404.831