Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03908 ATGGGTCGTGGAAGAGTATCTGTGGAATTCATTCAAAAGGAGAGATCTAGGAAGATAGTATTGCAAAAGAGAAAGATTGGCTTAATAAAAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTTGATGCTTGTGTGATTCTCTATGCTCCCAACTTTGAAGGTCAAGGGCGTCTTAAGACCTATGATGTTCAAGAATATTTTAACGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCACAAAGAGAAGTTTAAGATGGACTATCAAACTTGGGATGAATCCTTCAATTCTCTTGGAGATGAACAATTGAGGTTATTTGCTAGGATCTTGGATTCTAAGTTTGATGAATGCAATCTAAAGATGAATATGCTAGAAGGAGATCTTAGGGGAAAATCAATAGCTCTTGAGACAAACAAGATTGATAATCTTAATGATTCTCCTTACTTAGACTCAACTCCAAGTAGCTACTTCAATCTCGTGCAAAACAACATGTCTCAAGCACACATTTATCCTCCATTGATGAATATTAGTGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCGGGACAAAGCTCTCAACCCGCTCACATGGTTTCAACTGCACAAAGCTCTCATCCTTCTCATATGGTTTCCCGAGCACAGAGCTTCTACCATGTAGAGTCTAAGGCAGGTAGATATGCACAATCTTACCCTTGCAAGCAGATTGATTTTAATTGGACCCATCATGTTGATGCTAATGTTACCAATGATCTCAAAATCGGTATGAAGAAGAAGGAAGAAGCTGAAAATGATAAAAACTTTCCATCATACTATTATAATTGA 831 0.3682 MGRGRVSVEFIQKERSRKIVLQKRKIGLIKKVEELSILCDVDACVILYAPNFEGQGRLKTYDVQEYFNERMKKVEFEISKVHKEKFKMDYQTWDESFNSLGDEQLRLFARILDSKFDECNLKMNMLEGDLRGKSIALETNKIDNLNDSPYLDSTPSSYFNLVQNNMSQAHIYPPLMNISDKNPLGFWPLISGQSSQPAHMVSTAQSSHPSHMVSRAQSFYHVESKAGRYAQSYPCKQIDFNWTHHVDANVTNDLKIGMKKKEEAENDKNFPSYYYN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03908 276 CDD MADS 2 61 - -
Mepo5g03908 276 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mepo5g03908 276 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 115 - -
Mepo5g03908 276 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 60 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g03908 276 SUPERFAMILY SRF-like 1 53 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03908 Mepo-Chr5 48949744 48950658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03908 1 230 Type I MADS-box Gene Family AT5G55690 25.564 1.20e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g03908 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03908 - - tpra:123913303 327.02