Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03901 ATGGCTGCTACAGCAACTGCCGCAGTGGGTCCACGGTATGCCCCAGCAGATCCTACACTTCCTAAACCATGGAAGGGTCTTGTGGATGGGAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACTCAGTATGAAAGGCCTTCAAGCTCAGCTGCTCCACCGAAAACTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAGCAATCATCTCAAGGGCGTGGCCGGAGTCCTGATTTCACTGATCGGTATGATAGGAATGGAAATGGTGGGTCAAATGAAGGTGGATCCCGGAACCATCAGAGTTCCAAAGGTGACAGTTTTAGCTCTCATAATAATGTTGCAAATGGAACACCTGCTGCTGGAAATGGTAGTTCTATCAAAAGTCAAGTACCATCGGAGACCGGACCTGCATTATCTCCAGATGCTTATAGACGGCGTCATGAGATCACTGTTACTGGAGATAATGTGCCTCCACCTGTTACATCATTTGCGTCTTCTGGTTTTCCATCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCGTGGCCCATTGCACTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCTTTTATTCACCTCAAGCGTACTAATAATAACGCCAAAATGGGCCCCACTGTGTTGGTACTTTCACCAACAAGGGAGTTGGCAACACAAATTCAAGATGAAGCCGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACTTGTTTGTACGGAGGAGCACCAAAGGGTCCTCAATTGAAAGATATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGGGGTGCCTGCTCGTAGGCAAACTCTCATGTTTACCGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTACTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTGGTTGCTAACAAGTCTATTACTCAGCATATTGAAGTCTTGACATATGTGGAGAAACAGCGACGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGGTCGAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGCAGTGGAAGGACTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGATGTCAAAGACATTAGAGTGGTTGTCAACTTCGACTTCCCTACAGGAGTTGAGGATTATGTTCATAGGATTGGTAGGACTGGGAGGGCTGGAGCCACCGGTATTGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCTGATCTCATCAAAATCTTAGAGGGTGCAAACCAGCGAGTTCCTCCAGAACTTCGTGAGTTGTCATCTAGGGGTGGTGGTGGCTTTAGCAGATCCAAATATCGTACTGGTGGTCGTGGTGACTCTGGATTCGGTGCTAAGAGTTATGACTCTGGGTATGGTGGAAAGGGTAATGATGGAGGATATGGCGGAAGAGGTGGTGATTCAAATTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGCCGAGGTGGAGGCCGTGGATTTGACAGCGACTCACAGAGGAATGATCGTGATCGAAGCCCTGACAGAGGATCTAGCTGGAGTGATCGCTTTAAAACTGTCAATCGTGAACGCAGTCGTAGTCCTGTCAAGGGTGCACCATCTCAAAATGCCCCGGTCAGCTTTCACCAAGCAATGATGCAACGCAGTGGAGGTGGTAGTGATCGCAACAAGAGCTTTAGCCGGGAGCGAAGCCGCAGTCGTAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAACGGTGGCTCTCATTCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGATTGA 2157 0.4715 MAATATAAVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKTSSVPSSSVQVQQSSQGRGRSPDFTDRYDRNGNGGSNEGGSRNHQSSKGDSFSSHNNVANGTPAAGNGSSIKSQVPSETGPALSPDAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLTYVEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQRVPPELRELSSRGGGGFSRSKYRTGGRGDSGFGAKSYDSGYGGKGNDGGYGGRGGDSNYGGRGGYGSSAAFGRGGGRGFDSDSQRNDRDRSPDRGSSWSDRFKTVNRERSRSPVKGAPSQNAPVSFHQAMMQRSGGGSDRNKSFSRERSRSRSPQKGWGGSSGDGRNGGSHSYNGELEEGMIPDED 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03901 718 MobiDBLite consensus disorder prediction 46 144 - -
Mepo5g03901 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 542 IPR001650 -
Mepo5g03901 718 FunFam ATP-dependent RNA helicase RhlB 373 545 - -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 88 138 - -
Mepo5g03901 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Mepo5g03901 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 369 IPR014001 -
Mepo5g03901 718 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 542 - -
Mepo5g03901 718 SMART ultradead3 183 386 IPR014001 -
Mepo5g03901 718 Pfam DEAD/DEAH box helicase 188 357 IPR011545 GO:0003676|GO:0005524
Mepo5g03901 718 Gene3D - 374 544 IPR027417 -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 46 79 - -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 645 671 - -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 601 718 - -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 686 701 - -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 535 582 - -
Mepo5g03901 718 Pfam WW domain 20 50 IPR001202 GO:0005515
Mepo5g03901 718 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Mepo5g03901 718 SMART ww_5 19 52 IPR001202 GO:0005515
Mepo5g03901 718 CDD SF2_C_DEAD 383 512 - -
Mepo5g03901 718 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Mepo5g03901 718 FunFam probable ATP-dependent RNA helicase DDX17 140 372 - -
Mepo5g03901 718 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Mepo5g03901 718 Gene3D - 15 64 - -
Mepo5g03901 718 FunFam DEAD box RNA helicase family protein 15 71 - -
Mepo5g03901 718 Pfam Helicase conserved C-terminal domain 395 503 IPR001650 -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 612 642 - -
Mepo5g03901 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 519 IPR027417 -
Mepo5g03901 718 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Mepo5g03901 718 CDD WW 21 50 IPR001202 GO:0005515
Mepo5g03901 718 Gene3D - 142 373 IPR027417 -
Mepo5g03901 718 MobiDBLite consensus disorder prediction 1 25 - -
Mepo5g03901 718 SMART helicmild6 423 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03901 Mepo-Chr5 48883926 48890653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03901 162 541 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 3.55e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03901 K12823 - gmx:100816455 993.03