Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03893 ATGGATAAAAAACCATGCAACTCATCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGACTTGATTTTAATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCTAAAGCTGCTGGTCTTAAACGCACAGGAAAAAGTTGCAGGCTTCGATGGCTAAACTACCTTCGTCCAGATGTTAGAAGAGGGAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACTAGGATACAAAAGCACATTAAGCAAGTTGATCATCCTCACCAAAATAATTTCCAACAAATGAGTTTAGAGATAAATGATCATCATCAATCAAGTAGTAGCCAAGTTTCCAACATTGTAGAACCAATGGAAACTTACTCTCCACCTTCATACCAAGGAACTTTGGAGCCATTTCCAGCTCAATTTCCAACAATCAATGATCATCCCTCAAGTTGTTGTACAAATGACAACAATAACAACAATTATTGGAGCATGGAGGACATCTGGTCAATGCAATTACTCAATGGAGATTAA 627 0.3812 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDHPHQNNFQQMSLEINDHHQSSSSQVSNIVEPMETYSPPSYQGTLEPFPAQFPTINDHPSSCCTNDNNNNNYWSMEDIWSMQLLNGD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03893 208 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mepo5g03893 208 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Mepo5g03893 208 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mepo5g03893 208 SMART sant 15 65 IPR001005 -
Mepo5g03893 208 SMART sant 68 116 IPR001005 -
Mepo5g03893 208 FunFam Myb-related protein 305 73 147 - -
Mepo5g03893 208 FunFam Myb transcription factor 16 68 - -
Mepo5g03893 208 CDD SANT 73 112 IPR001005 -
Mepo5g03893 208 Gene3D - 16 68 - -
Mepo5g03893 208 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mepo5g03893 208 Gene3D - 73 146 - -
Mepo5g03893 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mepo5g03893 208 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Mepo5g03893 208 CDD SANT 18 63 IPR001005 -
Mepo5g03893 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mepo5g03893 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 149 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03893 Mepo-Chr5 48789305 48793750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03893 4 208 MYB Transcription Factor Family AT3G01530 59.809 1.04e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g03893 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03893 K09422 - gmx:778046 349.362