Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03874 ATGAGCCCATACCCATCTTCTTTCAAAAATTCCGAAACACAGTCACTGAGAGGCCGAGTCTCGCTGTTGATCGAACCACCGTCGGACCGGTCGCAACTGCCATCCGTTTTCCTGCTTCAACCTCCTCTTCCATCTTCATCCCGTTCTAGTCATTGTATTCGTGCTTCGTCACAGGTTTCCTTTGCCATGCTGGCGTTTTCAAGAGGTGTAGTTTCTCGCCTTCGACAATTTCCTGTGGCAACTTTGCCACGATTTTTTAGTTCGGATGTGGAGACTGTACGGACGATTGAAGCAAAACCTAGTGTGATGACACCGAATTCACGACGAACTGGTCTTGTAGCTGTAAAATGTGGAATGACTGCACATTGGGATAAATGGGGTGCTAGAATTCCGATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAAGTCAAAACTCCAGAGAAGGAAGGTTATTGTTCTCTCCAGATTGGTTGTGGACAGAAGAAAGAGAAACACTTGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCTGATGAAGAGGAAGCTCCAAGAGTTTCGAGTGACTGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCTGGCCAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGGTGTGATGAATCTGTGGGGTTTTGGTGGAGGTCCGGCATCCCACGGGAATTCGAAAGCACATAGAACCATGGGCTCTACAGGAATGCTTGGTCCTTGTAGGGTTTTTAAAGGTAAAAAGATGCCAGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGATCTACAAAATCGATCCTGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTTCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTCTATGAAAAACCTGACACATCTATACTTCCTTTCCCAACGTACTTTGTGCCAGAAGATGAAAATAGTGATGATATGAAACCTTTGATTGCTGATCTTGGAGATGTTGATCCATTTATGGTTGTTGATTAA 1071 0.4416 MSPYPSSFKNSETQSLRGRVSLLIEPPSDRSQLPSVFLLQPPLPSSSRSSHCIRASSQVSFAMLAFSRGVVSRLRQFPVATLPRFFSSDVETVRTIEAKPSVMTPNSRRTGLVAVKCGMTAHWDKWGARIPISILWVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHLTKPEVGHFRAQGVLMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMNLWGFGGGPASHGNSKAHRTMGSTGMLGPCRVFKGKKMPGRMGGKQRTVKNVWIYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPDTSILPFPTYFVPEDENSDDMKPLIADLGDVDPFMVVD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03874 356 Gene3D - 141 204 - -
Mepo5g03874 356 FunFam 50S ribosomal protein L3 139 204 - -
Mepo5g03874 356 NCBIfam 50S ribosomal protein L3 111 311 IPR019927 GO:0003735|GO:0005840|GO:0006412
Mepo5g03874 356 PANTHER 50S RIBOSOMAL PROTEIN L3 88 354 IPR019927 GO:0003735|GO:0005840|GO:0006412
Mepo5g03874 356 SUPERFAMILY Translation proteins 93 330 IPR009000 -
Mepo5g03874 356 Hamap 50S ribosomal protein L3 [rplC]. 109 314 IPR019927 GO:0003735|GO:0005840|GO:0006412
Mepo5g03874 356 Gene3D Translation factors 237 316 - -
Mepo5g03874 356 Pfam Ribosomal protein L3 194 289 IPR000597 GO:0003735|GO:0005840|GO:0006412
Mepo5g03874 356 FunFam 50S ribosomal protein L3 236 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03874 Mepo-Chr5 48344452 48349167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03874 209 334 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 27.273 2.36e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03874 K02906 - gmx:100775496 486.493