Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03840 ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTCTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAAGCTCAAAAAGGAGACCTTTCTTCAGCTCACCAGATGAACTGTATGATGAGGAGTACTACGAAGAGCAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTAGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTACAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCATATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCCCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCGTACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA 864 0.441 MESGRLYFDSSACRGNNMNMLFLGNADLGFRGRSMMSMEESSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03840 287 FunFam Homeobox-leucine zipper protein HAT5 60 124 - -
Mepo5g03840 287 SUPERFAMILY Homeodomain-like 65 133 IPR009057 -
Mepo5g03840 287 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Mepo5g03840 287 SMART HOX_1 65 126 IPR001356 GO:0003677
Mepo5g03840 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 207 IPR045224 GO:0003700
Mepo5g03840 287 Coils Coil 135 169 - -
Mepo5g03840 287 Gene3D - 60 129 - -
Mepo5g03840 287 CDD homeodomain 67 123 IPR001356 GO:0003677
Mepo5g03840 287 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Mepo5g03840 287 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Mepo5g03840 287 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Mepo5g03840 287 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Mepo5g03840 287 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03840 Mepo-Chr5 47885797 47888997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03840 1 281 Homeobox Transcription Factor Family AT3G01470 57.491 1.28e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo5g03840 Homeodomain 2.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03840 K09338 - gmx:100797836 446.432