Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03837 ATGATTGATAGGGGAAGAAGAAGAATTTCCAAAATTGATTTGGAGAATCTTCCATGTTATGATTATGTTGTTGATATAACTAGCACTATTGATTGTGCAATTTGCTTGGAGAATTTTACTATTGGAGATAAGTGTAGATTGTTACCATCTTGCAAGCATAGTTTTCATGCTCAATGTGTGGATCAATGGCTTTTGAGGAATTCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATAGTGGAGACAAAGTTGTTATAGGTAACAATGGAAGAGAAATCATAGAAAGTGGTCCATCTTGA 303 0.3432 MIDRGRRRISKIDLENLPCYDYVVDITSTIDCAICLENFTIGDKCRLLPSCKHSFHAQCVDQWLLRNSICPICRSMVGSHSGDKVVIGNNGREIIESGPS 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03837 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 79 IPR013083 -
Mepo5g03837 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 82 - -
Mepo5g03837 100 SMART ring_2 32 73 IPR001841 -
Mepo5g03837 100 ProSiteProfiles Zinc finger RING-type profile. 32 74 IPR001841 -
Mepo5g03837 100 SUPERFAMILY RING/U-box 25 79 - -
Mepo5g03837 100 CDD RING-H2_EL5-like 31 74 - -
Mepo5g03837 100 Pfam Ring finger domain 31 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03837 Mepo-Chr5 47832509 47832811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03837 25 79 C3H Transcription Factor Family AT1G53820 47.273 4.05e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03837 - K15692 mtr:120580952 184.496