Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03836 ATGGATTTCTTGTTTCTATTTCGTGAGTGTTGTTTCAAAAGAAGCATTTCCAAAACTGATTTGGAGAAGCTTCCATGTTATGATTATGTTGCAAAAGAAAATGGAAGTAACCCTTTGGATTGTGCAATTTGTTTGGAGAATTTCACTATTGGGGATAAGTGTAGATTGTTGCCTATCTGTAAGCACATTTTTCATGCTCAATGTGTGGATAAATGGCTATTGAAGACTCCGATTTGTCCTATTTGTAGATCTAGGGTTTGTTCTCATAGTGCAAACAAAGTTGTTATAGGTAACAATGGAAGAGAAATTGAAAGTGGTGTATCTAGAAATGTTGGCTTAGAATTAAGAGGAAATAATCCAGCATAA 366 0.3443 MDFLFLFRECCFKRSISKTDLEKLPCYDYVAKENGSNPLDCAICLENFTIGDKCRLLPICKHIFHAQCVDKWLLKTPICPICRSRVCSHSANKVVIGNNGREIESGVSRNVGLELRGNNPA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03836 121 Pfam Ring finger domain 40 83 IPR001841 -
Mepo5g03836 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 116 - -
Mepo5g03836 121 SUPERFAMILY RING/U-box 32 88 - -
Mepo5g03836 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 92 IPR013083 -
Mepo5g03836 121 ProSiteProfiles Zinc finger RING-type profile. 41 83 IPR001841 -
Mepo5g03836 121 SMART ring_2 41 82 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03836 Mepo-Chr5 47830085 47831199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03836 16 99 C3H Transcription Factor Family AT4G28890 38.095 2.70e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03836 - K15692 mtr:25495193 188.734