Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03834 ATGGCATCTATTATAGCTCTAGTACTAACATTTGTGGCGCTAGTGTTTTTTGTCATATGTCGTATGTGTCTTCCTCTTGCGATTTATAGGATTTGGAGAGTAGGAATAGAAACAATAATGGTTGATAGGGGAAGAAGAAGCCTTTCCAAAGTTGATTTAGAGAAGCTTCCATGTTATGATTATGTTGCAAAAGAAAATGGAAGTAACCCTTTAGATTGTGCAATTTGTTTGGAGAATTTCACTATTGGGGATAAGTGTAGATTGTTACCTACTTGCAAGCACAATTTTCATGCTCAATGTGTGGATCAATGGCTTTTGAGGAATTCCATTTGTCCAATTTGTAGATCTATGGTTGGTTCTCATAGTGGAGACAAAGTTGTTATATGTAACAATGGAAGAGAAAGCATAGAAAATGGATCATCTAGAAATGTTGTTATAGAATTAAGAGAAAATATTCCAACATTAGAAGTAGAATCACAAGAGCACTAA 489 0.3456 MASIIALVLTFVALVFFVICRMCLPLAIYRIWRVGIETIMVDRGRRSLSKVDLEKLPCYDYVAKENGSNPLDCAICLENFTIGDKCRLLPTCKHNFHAQCVDQWLLRNSICPICRSMVGSHSGDKVVICNNGRESIENGSSRNVVIELRENIPTLEVESQEH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03834 162 Pfam Ring finger domain 72 115 IPR001841 -
Mepo5g03834 162 CDD RING-H2_EL5-like 72 115 - -
Mepo5g03834 162 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Mepo5g03834 162 SMART ring_2 73 114 IPR001841 -
Mepo5g03834 162 SUPERFAMILY RING/U-box 64 120 - -
Mepo5g03834 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 149 - -
Mepo5g03834 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 125 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03834 Mepo-Chr5 47825280 47825768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03834 5 130 C3H Transcription Factor Family AT4G28890 35.556 1.45e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03834 - K15692 mtr:25495193 279.256