Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03822 ATGTCAGAAACTATGTATCCTAAGTTGTTATTTGAACATACCCATTTAAGAATGTCTTTGATTAATCATCATCAAATTTATCATAAAGATGGTTACTTTATGAATTTTCCACCACCATCATCACACTCTTCATCAAGTTCTTCAACAACATCAACATCAACAGCACCATCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATATCTGGTTTACTTCATTTGCTTGTTAGATTTCTTATAAAGCATCCATCTTCATCAAGTTCTTCTAATAGGCAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGTTACAACAGCTTTTTCATCTTCATGATTCTGGTTTAGATCAAGCTTTTATTGATGCACTACCTGTTTTTCAATTCAAGGAGATTGTTGGATTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGCTGAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCTACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAATCCGATATTCGATTTCGATGATCTTAGGGAAGATGATGGTTGTCCTTGTAATGGAGAGAATGGATTTGGTACTAGACAAAAAGAAATTGTTATTGAAGAAGTTGTTGATAAAGGGATTTTGCCAGTTCGACTCGGGAAATTCAAGAAGACGAACGTGGAAGTCGGTAGAGAGAATGAAGAAGTAGGTGAAACAAGTAGTAGTAATTTGGATGCAAGAAGATGTTATTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAGCCTTAAACCATGATAGTAGAATTCATCATGATACAAGGGTTATCAAAGGAATTGAAAATGGTGGAAATCTTTGTGTTGAGAGTGATTTAGAAGCAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCCAAGATTTGGTTATGGCCAAGAAAGGGAAAATTTTCTTCTAGTTCTTTAGAAGCTCATAATGGAATGGCATTGCCATCATATCTTAACAAAGATTTGCAGAATCATGGGATGAGGGAAACAGATGGTGTATGA 1176 0.3418 MSETMYPKLLFEHTHLRMSLINHHQIYHKDGYFMNFPPPSSHSSSSSSTTSTSTAPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPIFDFDDLREDDGCPCNGENGFGTRQKEIVIEEVVDKGILPVRLGKFKKTNVEVGRENEEVGETSSSNLDARRCYSMGSYQYVVGNSELRVALNHDSRIHHDTRVIKGIENGGNLCVESDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQNHGMRETDGV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03822 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 59 351 - -
Mepo5g03822 391 CDD RING-H2_EL5-like 155 198 - -
Mepo5g03822 391 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Mepo5g03822 391 SMART ring_2 156 197 IPR001841 -
Mepo5g03822 391 Pfam Ring finger domain 155 198 IPR001841 -
Mepo5g03822 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 205 IPR013083 -
Mepo5g03822 391 SUPERFAMILY RING/U-box 135 203 - -
Mepo5g03822 391 FunFam RING-H2 finger protein ATL46 118 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03822 Mepo-Chr5 47701668 47704383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03822 58 363 C3H Transcription Factor Family AT2G18650 40.176 1.42e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03822 - - gmx:100787206 492.656