Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03762 ATGGAGATTCACAAAAACACAAACAAGAAATGGGGAAGTGCAAAAAAGGAATCAAAATCATTAGAACCAATTACAACTACTACTCCAAAGATGAAATGGAAGAAAATGATGATTTTCTTCAACACAACAAAAACTACCCAAAACCAAAACCCACCTCAAGAATTTCTATGCCCTATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCCTCTGGCCATTCCTTTGACCGAACATCAGTCCAAGCTTGTAAAAATCTCAACTATACCCCCCAACTTGCTGATGGCACCACCCCAAATTTCACAACCTTAATACCAAATCTTAACCTCAAATCCTCCATTCTCAAATGGATCCAAACCCAAACCAAATTCCAAACCAACACTAATCAAACCTCAACTGAAAACCTCGTACTCAAACTTATGTCTTCAAAACAACATGAACAGAATCAAAACAACCTCGTACTCAAACTAATGTCATCAAAACAACATCAACAGAATCAAAACAACCTAGTATCAAACAAAAACGTCGAAGAAGAAGAAACACGACCAATATCAATGTTAACACCACGAAAAACCTCGTACTCTAGCTCAGAGGAATCTATAGCTACTGTCACGTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCATCATCTGAACTTGAACCTTCAACAACACCAGAAGAAGAAGAAATAGTAACAAAACTCAGAAACCATGAATTGGTTATAGTAGAAGAAGGTTTAATCTCACTCAGAAAAATCACAAGAACGAATTTGGAAAGTAGAGTTCAACTTTGCACCAATAGGGTACTATGTTCTTTGCGTTATTTGATTGTGTCTAAAAATGAGGTGGTAAAGGTCAACGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTTAACAAAGTGAAGATAGTCCGGTCAGGAATTGTTCCACCTTTGATCGAGGTTTTGAGGTTTGGATCGTGTGAATCGCAGGAACATGCTTCATGTGCGATGTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTATGCCTTTGCTTCACGCGCTTAAATCGGATAGTGAAAAGACACGCCATGACTCGGGTTTGGCTCTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGATTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTAATGTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGCAGGTGTTGTGGAGTGTTTGGTGGGTTTATTATGTGGGACTGGGTTGGTGTCTGAGTCGACAAGAGAGAGTTGTGTTGCGGTTTTGTATGCATTGAGTCATGGCGGATTGAGGTTTAAGGCGGTGGCAAAGGAGGTTGAAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTGCGGAGGATATTGGAGATGATGCGAGAAAAAGAGGTGGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTGGTCGAACTATGAGTCGACTCAATAGTGGATTGGATGAGTCAAGTGTTAAATCGGATGAGTTGTGA 1665 0.4054 MEIHKNTNKKWGSAKKESKSLEPITTTTPKMKWKKMMIFFNTTKTTQNQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSVQACKNLNYTPQLADGTTPNFTTLIPNLNLKSSILKWIQTQTKFQTNTNQTSTENLVLKLMSSKQHEQNQNNLVLKLMSSKQHQQNQNNLVSNKNVEEEETRPISMLTPRKTSYSSSEESIATVTSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNHELVIVEEGLISLRKITRTNLESRVQLCTNRVLCSLRYLIVSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLRFGSCESQEHASCAMFSLALDDDNKTAIGVLGALMPLLHALKSDSEKTRHDSGLALCHLSLVRSNRAKMVKLGFVSILLGMVKSGHMMDQVLLMLGNLGFGSDGRAAMLDAGVVECLVGLLCGTGLVSESTRESCVAVLYALSHGGLRFKAVAKEVEVVEMLQKMEKMKSEKANEKVRRILEMMREKEVEEEEVDWEELLDSGFSGRTMSRLNSGLDESSVKSDEL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03762 554 SUPERFAMILY RING/U-box 48 120 - -
Mepo5g03762 554 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
Mepo5g03762 554 MobiDBLite consensus disorder prediction 186 232 - -
Mepo5g03762 554 MobiDBLite consensus disorder prediction 1 17 - -
Mepo5g03762 554 MobiDBLite consensus disorder prediction 160 239 - -
Mepo5g03762 554 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Mepo5g03762 554 Pfam U-box domain 52 122 IPR003613 GO:0004842|GO:0016567
Mepo5g03762 554 SUPERFAMILY ARM repeat 240 509 IPR016024 -
Mepo5g03762 554 Gene3D - 235 512 IPR011989 -
Mepo5g03762 554 Coils Coil 486 521 - -
Mepo5g03762 554 Pfam Armadillo/beta-catenin-like repeat 311 347 IPR000225 GO:0005515
Mepo5g03762 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 137 IPR013083 -
Mepo5g03762 554 MobiDBLite consensus disorder prediction 1 26 - -
Mepo5g03762 554 PANTHER U BOX DOMAIN-CONTAINING 43 514 - -
Mepo5g03762 554 MobiDBLite consensus disorder prediction 160 174 - -
Mepo5g03762 554 SMART arm_5 429 472 IPR000225 GO:0005515
Mepo5g03762 554 SMART arm_5 308 348 IPR000225 GO:0005515
Mepo5g03762 554 SMART arm_5 349 389 IPR000225 GO:0005515
Mepo5g03762 554 MobiDBLite consensus disorder prediction 533 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03762 Mepo-Chr5 47078308 47080584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03762 1 554 U-box Gene Family AT5G40140 46.924 3.03e-151 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03762 - - lja:Lj2g3v1020040.1 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g03762 5 47078308 47080584 Mepo3g05877 3 73076107 73078376 ECH
Mepo5g03762 5 47078308 47080584 Mepo5g03762 5 47078308 47080584 ECH