Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03734 ATGAAATTCAAACGACCCGTAGGTTCATCAAGTGCTGATTCCTCTGAAAATGGAGGCGGCGGTGGTGGAGGTGGAGTTGTTAATGGCAGTGGAGGTGCAAGTACTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAATATGACATGTTCCTTCAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCATGGTGTCATAGCTGCTGTCAAGGAACTATTCAAAGGTCACAACAATTTGATTTATGGATTCAACGCTTACCTACCAAAGGGATATGAGATAAGACTTGATGAGGATGAAGCTCCTCCAAAGAAAGAGGTTGAATTTGAAGATGCTATTAGTTTCGTGGGCAAGATAAAGAAACGATTCGAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGACCATTACTGAGGTTTACAGTGAGGTCACTACCCTTTTTAAGGACCATAGTGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCGCTAGCACCTTCCACACAACAAGCTCCATTAGGTCATCGTGATCTGAGTGTTGAACATGATAAGAGAGAATGCGGTGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTTGCCTCTCATGACGATAAAGATGCGTTAAAGTTCATGTATAGTCAAGCATTAAGTTTATGTGAGAAAGTTAAGGAGAAGTTGAGCAGTGCCGAGGACTACCAAACATTCTTGAACTGCCTTCATAATTTTAGCAATGGAATAATAAAAAAGAATGATTTACAAAATACGGTGACCGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGACGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTTGCCGCTGATGGTCATTTATCACGATCATCCAAGTTGGAGGACAAAGAACATAGGCGTGAGACTGATAAAGAGAAGGAAAGATACAAGGAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGACTGCAAACGTTGTTCTCCGAGCTACCGGCTTCTACCGGCCGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAGCTTGGTGCGCAAGTACTGAATGATCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCCGCTGCTAAACGAGCTGACGAGCTGTATAACAGCATTGTTGAAAATAAGATTAGTGTGGAGAGTCTAAGCCGTATTGAAGATCACTTCACTGTTCTGAATCTAAGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCTTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAATAGATGTCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATCAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTGTTCAGACTATTGCTGCAGGAGCTAAACATCCTCTCATTCCACATTTCGAGTTTGACTTTTCTGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAAGTATTCCAAAGTAAAGAGTTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAACCGATGCTTGGTGTAACTTCCCAGTCGCATGAGACGGAAAGGGCTGAGGACAGGAAAGCAGGACATAATGCTCGAAGTTCTGTTGCACCTAACGTAGGAGGTGATGGAAGCCCTAACAGAGAGTCCAATTCAAGGCTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAGCAGAAGTTAAAAATGGTCACCGGACTAGTGTAGCTGCCAATGATAAAGAAAACGGTTCTGTTGGTGGTGAGCTTGTTAGTAGAGATGATCATTTAATGGATAATAAAGGGCAGAAAAGTGTTGAAAACAGTGATAAAGCCCCTGGATTTGTTAAACAGTTCTCCTCTGACGAACAAGCAGCGAGAAACTCTGCATCTGTCACAATTAGAGGTGAAAGCAGTGTGCATATGTCCCCAGGCCGTGTACTTACTCCAACCCGACCTACTGATGCCGATGTCTCTGTTGCTGTAGTCATAGCCAAGTCTCCGAGTGCTAATGTACCTTTGGTGGAGGGTGTTGCCGCTGCACCTCCAGTACCAGTGGCCAATGGCGTGTTAGTTGAGAACAGCAAAGTTAAAAGCAATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCTGACTCTGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGCGCAGTCAAACCACAATGATGATAGAAGGAAATATGAGTCTAGAAATGGAGAGGACGAACACCGTCCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGTAGTGAGTCTGCTGGTGATGAATGCTCCCGGGAAGATCATGAGGAGGAAGATATGGAACATGATGATGTTGACGGTAAAGCCGAGAGTGAAGGTGAAGCAGAGGGGATGTGTGATGCTGATGCACAAACTGGAGTAGATGGCTCATCTTTACCATTATCAGAGAGGTTTCTGTCAACTGTGAAACCTCTCACAAAGCATGTATCTGCAGTTTCATTTGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGTTCTCTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACAAGCGCTGAAATGAAATGGAAAACAAAAGATTCTAGTTCTACAGATCCTTACGCAAGATTTATGGATGCATTGTACAATTTGCTCGATGGATCCGCAGAGAATGCCAAGTTTGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGCTATTCACATTGGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACGGATGAGGAAGACGCTAAGCTTCTCCAATTATACGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTTATCCTTCATGAGGAGAACATATACCGGTTTCAATCTTCGTCTAGTCCTTCTCGGCTCTCGATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATTGCTGCTGTTGCTGTTGATCCAGATTTTTCATTTTATCTGCACAATGATTTTCTGTCTGTCCTCCCTGGCAAAAAGGAGCCTCATGGCATTTTACTGGAAAGAAACAAACCGAAATATGGGGACTTAGATGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTGAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAGGAAAAGACGAACACCATCATCATCATCATCAAGTACGGCATCTTCTCGGTCTCGCAGGGAAAGAGAGGAAAGATTCCGCAAATTCATGGCGTCCTCCACCTAA 3891 0.4133 MKFKRPVGSSSADSSENGGGGGGGGVVNGSGGASTPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHNNLIYGFNAYLPKGYEIRLDEDEAPPKKEVEFEDAISFVGKIKKRFENDEHVYKSFLDILNMYRKEHKTITEVYSEVTTLFKDHSDLLEEFTRFLPDNSLAPSTQQAPLGHRDLSVEHDKRECGDLNSLRSPNKKKSVKKAEANGLSSDFASHDDKDALKFMYSQALSLCEKVKEKLSSAEDYQTFLNCLHNFSNGIIKKNDLQNTVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLAADGHLSRSSKLEDKEHRRETDKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYNSIVENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQTIAAGAKHPLIPHFEFDFSDAEIHEDLYKLVRYSCEEVFQSKELFNKIMRLWSTFLEPMLGVTSQSHETERAEDRKAGHNARSSVAPNVGGDGSPNRESNSRLPKSDKNEVDGRVAEVKNGHRTSVAANDKENGSVGGELVSRDDHLMDNKGQKSVENSDKAPGFVKQFSSDEQAARNSASVTIRGESSVHMSPGRVLTPTRPTDADVSVAVVIAKSPSANVPLVEGVAAAPPVPVANGVLVENSKVKSNEESSVPCKVEKEEGELSPNADSEEDNFVAYGDSNAQSNHNDDRRKYESRNGEDEHRPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSREDHEEEDMEHDDVDGKAESEGEAEGMCDADAQTGVDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFVLFRLHQILYERILSAKENSTSAEMKWKTKDSSSTDPYARFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEIAAVAVDPDFSFYLHNDFLSVLPGKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRRKRRTPSSSSSSTASSRSRREREERFRKFMASST 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 1263 1296 - -
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 938 952 - -
Mepo5g03734 1296 ProSiteProfiles PAH domain profile. 252 321 IPR003822 GO:0006355
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 696 714 - -
Mepo5g03734 1296 SUPERFAMILY PAH2 domain 254 321 IPR036600 GO:0006355
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 1 34 - -
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 344 363 - -
Mepo5g03734 1296 Pfam Sin3 family co-repressor 383 474 IPR013194 -
Mepo5g03734 1296 SUPERFAMILY PAH2 domain 118 190 IPR036600 GO:0006355
Mepo5g03734 1296 SMART hdac_interact2seq4b 381 481 IPR013194 -
Mepo5g03734 1296 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 908 922 - -
Mepo5g03734 1296 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mepo5g03734 1296 Pfam Paired amphipathic helix repeat 274 318 IPR003822 GO:0006355
Mepo5g03734 1296 Pfam Paired amphipathic helix repeat 144 188 IPR003822 GO:0006355
Mepo5g03734 1296 Pfam C-terminal domain of Sin3a protein 1011 1258 IPR031693 -
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 777 797 - -
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 842 963 - -
Mepo5g03734 1296 FunFam Paired amphipathic helix SIN3-like protein 120 191 - -
Mepo5g03734 1296 ProSiteProfiles PAH domain profile. 121 191 IPR003822 GO:0006355
Mepo5g03734 1296 SUPERFAMILY PAH2 domain 34 106 IPR036600 GO:0006355
Mepo5g03734 1296 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mepo5g03734 1296 FunFam Paired amphipathic helix protein SIN3 249 323 - -
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 1278 1296 - -
Mepo5g03734 1296 Gene3D Paired amphipathic helix 120 192 IPR036600 GO:0006355
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 882 907 - -
Mepo5g03734 1296 PANTHER SIN3B-RELATED 38 1153 IPR039774 GO:0003714
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 659 740 - -
Mepo5g03734 1296 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Mepo5g03734 1296 Gene3D Paired amphipathic helix 249 323 IPR036600 GO:0006355
Mepo5g03734 1296 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03734 Mepo-Chr5 46658725 46686753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03734 19 129 WRKY Transcription Factor Family AT4G12020 48.214 3.31e-19 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo5g03734 Sin3a_C 1.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03734 K11644 - gmx:100807181 1888.23