Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03717 ATGGGAAGGCCTCCTTGCTGTGATAAAACCAATGTGAAAAGAGGTTTATGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTAGCCAATCATGGAATTGGAAATTGGACAACTGTTCCAAAGAAAGCAGGGTTGAATAGGTGTGGTAAGAGTTGCAGGCTAAGATATACAAATTATCTAAGACCTGATCTGAAGCATGATAGTTTTACACCTGAAGAAGAAGAGCTCATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTGTATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTGATTTCTGACTTAGGAAACATTAGTAGCCTCACAACAACAAACCCTCAAAACCAAATGAATTTTGTCAATAACAACCCAATTTTGGATCAAACAAAAGATGAACAAGTTCAACCATTGCAAAATCATCAAGTTCAATATCACCAATTCACAAACCAAGAGAATTTCCAACAACATGTCTTAAGTGAAGTTGCATCATCAAGTTCATCTTCATCTTCTTCTAATCTCACAAGGTTTAGCTCGCCGATTTCGTACTCTTGCAACACTTCACAAGCTCAAATTAATTCTAACTTTGATTGGAGTGATTTTCTTCACAATGATGAGCCTTTAGTGTGGACAGAAATTCAACAAATTCAACAATGTGACATACAAAGGGTAATGTCATCATTGAGCCTCTCAGGTATAATGCAAAGTGAAGGTGAAATTTCCAACAATTTCAATAGTAATGATGATGGTAAACAAGGTGGTTCAAGTGAAGGTTTTGAGGATGTTGCTTGTGTTGCAAGCAAAGAATATCAAGGTGATAAGAAGTGTGAAGGAAATTCATTTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAAGGACAGTGAGATAATGGCAACATTTCCAGACATTTTGGATGCTTCTTTTGATTATTAA 1035 0.3633 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTTVPKKAGLNRCGKSCRLRYTNYLRPDLKHDSFTPEEEELIITLHGAIGSRWSCIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVISDLGNISSLTTTNPQNQMNFVNNNPILDQTKDEQVQPLQNHQVQYHQFTNQENFQQHVLSEVASSSSSSSSSNLTRFSSPISYSCNTSQAQINSNFDWSDFLHNDEPLVWTEIQQIQQCDIQRVMSSLSLSGIMQSEGEISNNFNSNDDGKQGGSSEGFEDVACVASKEYQGDKKCEGNSFSGNSFVDGILDKDSEIMATFPDILDASFDY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03717 344 CDD SANT 69 112 IPR001005 -
Mepo5g03717 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo5g03717 344 SMART sant 13 63 IPR001005 -
Mepo5g03717 344 SMART sant 66 114 IPR001005 -
Mepo5g03717 344 FunFam transcription factor MYB80 69 129 - -
Mepo5g03717 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo5g03717 344 FunFam Transcription factor RAX3 7 67 - -
Mepo5g03717 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo5g03717 344 CDD SANT 17 61 IPR001005 -
Mepo5g03717 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo5g03717 344 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Mepo5g03717 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo5g03717 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo5g03717 344 PANTHER F14D16.11-RELATED 1 344 - -
Mepo5g03717 344 MobiDBLite consensus disorder prediction 272 291 - -
Mepo5g03717 344 MobiDBLite consensus disorder prediction 272 286 - -
Mepo5g03717 344 Gene3D - 68 131 - -
Mepo5g03717 344 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03717 Mepo-Chr5 46357847 46360112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03717 1 344 MYB Transcription Factor Family AT3G28470 46.927 1.43e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g03717 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03717 K09422 - gmx:100815077 422.55