Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03665 ATGAGCAATGAGATTGTTCAAAAACCTCCACCATCAATCCTCGTTGGTCGATTCAAAGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTCGGTTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATTACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCACGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATTCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTACTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCGTCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCTACTGGTAGGACAGTCGAGAGAGAATCTCCCCATCGTGCTGTTGATTATGGCCTAGATAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGACACGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGGCAACCACGTCAGAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGTTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCGACAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATCGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCACCAGTTTTGCCTGCAGCTTTTGAAACGAGGCACTCCGTAAATGTGCATGCTCCACGTCCTCCAAGCATAACTCCTATATTTCCATTGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCGTTGTGAGTCATGGTCTAATCAATAGACCTTTTCCTGTGCATGAACAATCATTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCAGCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGGGGAGCTTTGCGACCTTTACCTCCACCTGGCCCACATGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAACCAGCAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCGCAAGGTGTAATCTCATTGACTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGATACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAAAAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACTTTAATGCGCCTAATGGAATAACAACAGGCATGGACAGATCGCAGTTAGGCTCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTGTGAAGATTTTGTGATGGACGAAGGGGTATGTGTTTCTCATATTTACTTTTCTATGCATTTGTCTTGTTTTTGTTATACTTTAAGTCTTTAA 2544 0.4269 MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDSSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHRAVDYGLDKGLGREEELSEWTRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPAAFETRHSVNVHAPRPPSITPIFPLKNPVRNPFESINANSTVVSHGLINRPFPVHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEKFYSDETEEWMYRGAVYFNAPNGITTGMDRSQLGSIIHAKCRSESTPCEDFVMDEGVCVSHIYFSMHLSCFCYTLSL 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03665 847 MobiDBLite consensus disorder prediction 336 358 - -
Mepo5g03665 847 Gene3D - 31 163 IPR008942 -
Mepo5g03665 847 SUPERFAMILY ENTH/VHS domain 37 165 IPR008942 -
Mepo5g03665 847 Pfam CID domain 56 157 IPR006569 -
Mepo5g03665 847 SMART 558neu5 41 163 IPR006569 -
Mepo5g03665 847 FunFam polyadenylation and cleavage factor homolog 4 35 163 - -
Mepo5g03665 847 CDD CID_Pcf11 46 163 IPR047415 -
Mepo5g03665 847 MobiDBLite consensus disorder prediction 591 615 - -
Mepo5g03665 847 ProSitePatterns Zinc finger C2H2 type domain signature. 676 696 IPR013087 -
Mepo5g03665 847 MobiDBLite consensus disorder prediction 171 190 - -
Mepo5g03665 847 ProSiteProfiles CID domain profile. 38 166 IPR006569 -
Mepo5g03665 847 MobiDBLite consensus disorder prediction 587 619 - -
Mepo5g03665 847 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 825 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03665 Mepo-Chr5 45666208 45671765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03665 1 826 C2H2 Transcription Factor Family AT4G04885 45.135 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g03665 CID 4.4e-13 CL0020