Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03664 ATGCTTGCCCGGAGAGAAATACCAACAAATTCTTCATCAGTTTTCTCAAACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGTTATCTCACCAACGGACAACCTCGTCAAAATCCAAGATTTCTAATTGATGCCTATGGTAGTGAGAAAAGACAAGAAACTTCATGGATGAATACTGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAAGTATTGGTTTCTCGTCAAAAATGCCTGTCACTGTTGCAGCAAGTCCAACTTCTTTAGTGTCAAGGGTGCAACCTTATCCACCAGTTTTGCCAGCAACTTTTGAAACAAGGCCCTCCGTAAATGTGCATGCTCGACGTCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCGTTCGAATCAATAAATGCTAATAGTACCGCTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTTGCGAATAATGGTATCCCTAAAAGAAACCTGCATCAGTTGCCTAATCAGCTACCTGGTCCGATTACATCTAACCCGCCAACCAGTGGACAAACACCGCCATTCCAGTTTTTTCCATCTCAGGATCCAACAGCGTCGCAATTTAGTCAGAGGACCACTTTGCCAAGACATGCACCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCGACCTTTACCTCCAGCTGGCCCACATGCTCTACCCCAGATTCTACCTCATCCGAATCCCAGTCCTAATGTGTTAAGCCAACATCCAACTGTTGGATATTCTAATTTGATTAGTTCACTCGTTGCCCAAGGTGTTATCTCATTGGCTAATCAAGCCCCTGTGGAGGTAACTAAATCGCCTAATCAAGCCCCTGCGGAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATGAATCTGTGATCCGTGCCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCACCGATTCAAATCCCAAGACGAGCACAGAAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACAGTAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGCGAGACGATGTGGCTTAAAGGTGCAGAGACATTGGGAGTTAAGTCTGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAGAGAAGATGAAGAGTTGGCAGTTCCTGCGGACGAGGATCAAAATACTTGTGCATTATGCGGAGAACCTTTTGACGTGTTTTACAGTGATGAAGCGGAGGATTGGATGTGTAGAAGAACTGTATACCTTAACGCGCCTAATGGAATAGCAACAGGCATGGACAGGACGCAGTTAGGCCCTATTATTCATGCTAAATGCAGATCTTAA 1392 0.4454 MLARREIPTNSSSVFSNFPRKRCFDEFSYLTNGQPRQNPRFLIDAYGSEKRQETSWMNTEEEEFNWEDMIPTPSIGFSSKMPVTVAASPTSLVSRVQPYPPVLPATFETRPSVNVHARRPPIYPSKNPVRNPFESINANSTAVSHGLINRPIPVHEHGVANNGIPKRNLHQLPNQLPGPITSNPPTSGQTPPFQFFPSQDPTASQFSQRTTLPRHAPLPNARPVMPLPMRPLPPAGPHALPQILPHPNPSPNVLSQHPTVGYSNLISSLVAQGVISLANQAPVEVTKSPNQAPAEDFIGLEFDPNILKVRHESVIRALYGDFPRQCTTCGHRFKSQDEHRSHMDWHVTKNRMSKNSKQKPSRKWFVSETMWLKGAETLGVKSAPGFLPTETTEEKREDEELAVPADEDQNTCALCGEPFDVFYSDEAEDWMCRRTVYLNAPNGIATGMDRTQLGPIIHAKCRS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03664 463 ProSitePatterns Zinc finger C2H2 type domain signature. 326 346 IPR013087 -
Mepo5g03664 463 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 47 462 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03664 Mepo-Chr5 45649054 45650541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03664 30 462 C2H2 Transcription Factor Family AT4G04885 41.304 5.25e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g03664 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03664 K14400 - gmx:100794796 427.557