Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03656 ATGGCTTTTCCACCTTCTCACACTTTCATCTTCCAAACTCATGAAGATCATCATCATCATGAAAACATACTTTCATCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTAGTGGAAGTAATGATGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATAAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAGAGGAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGACACACTTAAGGCTCAAAACAACAAATTACATGCAGAGCTACAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAACAATTAGCCTCAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTAGACCTTTCTAGAACATCAAATTCACTTAAGCCTACAAGTATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCAATTCCGTTAA 837 0.3704 MAFPPSHTFIFQTHEDHHHHENILSSSTSLNSYPSFPPHQHFQGSGSNDGASFMMKRSMSFSGIESNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNNKLHAELQTLKKRDCFENGTISLKKENEGSWSNGSDNSSDMNLDLSRTSNSLKPTSMTQLLQCSSRSDLQDESFCNMFNNIDEQQSLWPWTDHQQHQFR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03656 278 Gene3D - 89 165 - -
Mepo5g03656 278 SMART HOX_1 95 156 IPR001356 GO:0003677
Mepo5g03656 278 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Mepo5g03656 278 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Mepo5g03656 278 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Mepo5g03656 278 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Mepo5g03656 278 Coils Coil 144 192 - -
Mepo5g03656 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 269 IPR045224 GO:0003700
Mepo5g03656 278 SUPERFAMILY Homeodomain-like 89 154 IPR009057 -
Mepo5g03656 278 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Mepo5g03656 278 CDD homeodomain 97 153 IPR001356 GO:0003677
Mepo5g03656 278 FunFam Homeobox-leucine zipper protein ATHB-13 88 156 - -
Mepo5g03656 278 Pfam Homeobox associated leucine zipper 152 191 IPR003106 GO:0006355|GO:0043565
Mepo5g03656 278 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03656 Mepo-Chr5 45537550 45540824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03656 1 271 Homeobox Transcription Factor Family AT5G15150 52.703 7.55e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo5g03656 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03656 K09338 - gmx:100790803 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g03656 5 45537550 45540824 Mepo3g00131 3 1835814 1839473 PCT