LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo5g03646	ATGGAGGAAAGAACTGAGATGGATATTAATAAGGTTGATGATTTGATGCCTGGATTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAGCTAGCAAGTAGTGGTGAAAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGACCTAATAGAGTTACAAGAGCTGGATTTTGGAAGGCAACTGGAACTGATAGACCTATATACTCATCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAGGGCAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTGCATTTCAGATTCAAACTCTGCTCCTAAAAAGTTTTCAGATAAAAGTTTCTCTCCAAATGATTCATGGGCAATCTGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCATTGTCTCACCCTTGGATCTCCCAATTACCAGGAAGCATGGTTACTGAATTACTCACACAAACTACAAATATCAACCAATTCTGTTCAGAAAATAATATATCATGTACAACAGAACAAGGATCATCAGCAGGAACAAACTTACAAATCAACAAGCATGAGCTACAACAAGTCTCCAATACCAACTTCTCAACTTCAGATTTTCCAAATTACAAACCAATCAACAACATCAACACAATTTCCAAATCCTCACAAATTCCTGTTCCTAATGGAGACATTATTGATAACCTAATGTTCTACACACTTGAGGCCAATGGTTCCACAACGTGCACAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATGCAAATAATCAATATAATGGCTTCTCAATTAGTTTACCTCAAGACATGCAACCAAACATTGTGAATATTCAAGATCAAATGCAGCTTAATCAATGGGAAAATCTTGGAAGAACAATTGAATTTCCATTCAATTTGTCTCCAAGTTTTGATGCTTTGAGGACCAGTGTTACATGGGACTCACCACCTTGCACTAGTGAAATGTCGACAACCTATGTCACTAGTAAATGTTACACTTAG	1167	0.3633	MEERTEMDINKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGMKTDWMMHEFRLPCISDSNSAPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVTELLTQTTNINQFCSENNISCTTEQGSSAGTNLQINKHELQQVSNTNFSTSDFPNYKPINNINTISKSSQIPVPNGDIIDNLMFYTLEANGSTTCTIDDSSILSNTNYIGFEDANNQYNGFSISLPQDMQPNIVNIQDQMQLNQWENLGRTIEFPFNLSPSFDALRTSVTWDSPPCTSEMSTTYVTSKCYT	388

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo5g03646	388	Gene3D	NAC domain	24	178	IPR036093	GO:0003677\|GO:0006355
Mepo5g03646	388	Pfam	No apical meristem (NAM) protein	17	141	IPR003441	GO:0003677\|GO:0006355
Mepo5g03646	388	SUPERFAMILY	NAC domain	13	173	IPR036093	GO:0003677\|GO:0006355
Mepo5g03646	388	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	14	239	-	-
Mepo5g03646	388	ProSiteProfiles	NAC domain profile.	15	173	IPR003441	GO:0003677\|GO:0006355
Mepo5g03646	388	FunFam	NAC domain-containing protein 35	24	176	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo5g03646	Mepo-Chr5	45302810	45305859	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo5g03646	1	263	NAC Transcription Factor Family	AT1G26870	56.989	1.10e-98	298

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Mepo5g03646		NAM	1.1e-37	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo5g03646	-		-	mtr:25495303	781.941

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