Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03642 ATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATCCACAAAGAAGTGTTGTGAAATATGGAGAATGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAATTCATGCCAAGTAGTGAACAAGGTACAAATGGTTCCCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAAGTTGAAGCTGTTTCTGAGAGTTCTTCACCTCATTCAAATGGTACTTGA 258 0.3992 MRKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSSEQGTNGSLTCAACGCHRNFHKREVEAVSESSSPHSNGT 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03642 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
Mepo5g03642 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 73 - -
Mepo5g03642 85 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Mepo5g03642 85 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03642 Mepo-Chr5 45180070 45180710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03642 1 84 Zinc finger-homeobox gene family AT3G28917 58.586 6.67e-32 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo5g03642 ZF-HD_dimer 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03642 - - aprc:113868039 140.198