Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03636 ATGAGTTTGTGTTGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGTTAGTGACCCAACATGGTATCTCCATGGTTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTCGTGTGGCCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTCGGAGGTGCAGGTGATGTGCATTCTGTATCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAAGAATTGGGGACAAAATTGGCAGAGTAACTCTTATTTAAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCCGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA 612 0.4101 MSLCCGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVSDPTWYLHGSIVVTATNFCPPGGSCGPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSKNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPRWSFGQTYTGRQFLY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03636 203 SUPERFAMILY Barwin-like endoglucanases 4 127 IPR036908 -
Mepo5g03636 203 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 119 198 IPR007117 -
Mepo5g03636 203 PANTHER EXPANSIN-A15 5 201 IPR002963 GO:0009664
Mepo5g03636 203 FunFam Expansin 109 201 - -
Mepo5g03636 203 CDD DPBB_EXPA_N 6 94 - -
Mepo5g03636 203 Gene3D - 2 105 IPR036908 -
Mepo5g03636 203 SUPERFAMILY PHL pollen allergen 106 198 IPR036749 -
Mepo5g03636 203 Pfam Lytic transglycolase 22 99 IPR009009 -
Mepo5g03636 203 Gene3D - 109 201 IPR036749 -
Mepo5g03636 203 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 5 109 IPR007112 -
Mepo5g03636 203 PRINTS Expansin signature 155 176 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 120 141 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 84 97 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 56 66 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 108 120 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 17 31 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 67 84 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 184 200 IPR002963 GO:0009664
Mepo5g03636 203 PRINTS Expansin signature 44 55 IPR002963 GO:0009664
Mepo5g03636 203 SMART dpbb_1 22 99 IPR007112 -
Mepo5g03636 203 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Mepo5g03636 203 PRINTS Expansin/Lol pI family signature 92 108 IPR007118 GO:0005576
Mepo5g03636 203 PRINTS Expansin/Lol pI family signature 146 160 IPR007118 GO:0005576
Mepo5g03636 203 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Mepo5g03636 203 PRINTS Expansin/Lol pI family signature 4 22 IPR007118 GO:0005576
Mepo5g03636 203 Pfam Expansin C-terminal domain 110 187 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03636 Mepo-Chr5 45018562 45020027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03636 6 203 Expansin Gene Family AT3G29030 81.407 4.81e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03636 K20628 - gmx:100790170 368.622