Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03628 ATGATGGATGCAATGGAGAAAAATTCAAGAGATGTTGAGAGTGATGAAAAAATTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTAATAATTCTTTTTGTGCTATTGCCATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCTTGGAGGGCCAATATGGGTGAGAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATATCCAACAGGTCTAAGGACAAATAGGGCCACATGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAGATATATAGAGAGAAGATACTAATTGGAATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCTCCTAAAGGTGAAAAAACAAATTGGGTCATGCATGAATTCCGATTAGAAGACACATGTTCTTTGCAAAATATATCCAAAAGAGCTATGAAGGAGTGGTCTATATGCAGAGTTTTTGAGAAAAGTTCTTGTGGAAAGAAAATGCATATTGAAGATTTGGTAAGGTTCAATTCAATTGGAAAAGAACTACTACCTCCATTGATGGATTCTTCACCATACAATAGTGAAACAAAAGCTACTATTGAAGATTCATCACATGTGACATGTTTCAATGAACCAAATCTAATTGATGAGCATCAAAGTACACAAGACAATGACAACAACATAGCTGGTAGCTTTGATACTCCTATGTTAACATCTTCATATTCTTCAAACCCTTCTTATGATAATATTTCCCCTATTTCATGGACCCCTAGTTTGTCACACCAATCCACACAAGTTGGAAATTCACAATCCTTTGATGTTGACATTTCATATGAAATGTTTCAAAGATCATATGTGAATGAAGAATTTTCATCAGATTTAGTAGGACATTATGACACTGGTTGCCTATGGAATTATTGA 951 0.3554 MMDAMEKNSRDVESDEKIELPPGFRFHPTDEELITHYLSQKVLNNSFCAIAIGEADLNKCEPWDLPWRANMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPKGEKTNWVMHEFRLEDTCSLQNISKRAMKEWSICRVFEKSSCGKKMHIEDLVRFNSIGKELLPPLMDSSPYNSETKATIEDSSHVTCFNEPNLIDEHQSTQDNDNNIAGSFDTPMLTSSYSSNPSYDNISPISWTPSLSHQSTQVGNSQSFDVDISYEMFQRSYVNEEFSSDLVGHYDTGCLWNY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03628 316 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Mepo5g03628 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 252 - -
Mepo5g03628 316 FunFam NAC domain-containing protein 100-like 29 174 - -
Mepo5g03628 316 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Mepo5g03628 316 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
Mepo5g03628 316 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03628 Mepo-Chr5 44879977 44881509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03628 18 316 NAC Transcription Factor Family AT5G07680 50.153 4.73e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo5g03628 NAM 9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03628 - - gmx:100781383 403.675