Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03626 ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTGCTTTGCCAGCTAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCAGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGGCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCAGTTACACACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAATGCTCATTCCAAAACTGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCTGAAGCTAGACTTGTTAGAGAGTCCAAAATTCGTTCACATAATTCACTTCTTCATCATAATCACTTGAAAGCTTGGAATATTAATCTTGAGTCTCCTACTTCAACTTTATCTTTCAATGAGAATGTTACACCAATTATGAATAGTGGAGAAATTGGAGGAGAAAATACCAACAATGATAATGAGAAAAATAATAATAATGATGTTGTGCCTATGATTGAGTTTGTAGGGACTAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGATCAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAAGTGTTGATGATGTCATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAGACAAATTCTGAAGACTTGAGTTTGTCAGAGAGTGGAGGTGAATCCAACAATGGTGGTGATGGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTACTGGAATAATATTCTTAATTTAGTTAATTCTTCTCCATCTGATTCACCAATGTTTTGA 1044 0.3554 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHHNHLKAWNINLESPTSTLSFNENVTPIMNSGEIGGENTNNDNEKNNNNDVVPMIEFVGTNSSSIVKEEGGDDQDQWKGYESSLTFTSNLHHELTMSMDQSVDDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGDGGSGSEFYEDNNNYWNNILNLVNSSPSDSPMF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03626 347 Gene3D - 69 116 - -
Mepo5g03626 347 MobiDBLite consensus disorder prediction 300 322 - -
Mepo5g03626 347 FunFam MYB transcription factor 69 116 - -
Mepo5g03626 347 CDD SANT 69 112 IPR001005 -
Mepo5g03626 347 Gene3D - 13 66 - -
Mepo5g03626 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 253 - -
Mepo5g03626 347 CDD SANT 16 61 IPR001005 -
Mepo5g03626 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mepo5g03626 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo5g03626 347 MobiDBLite consensus disorder prediction 122 142 - -
Mepo5g03626 347 FunFam MYB-related transcription factor 13 66 - -
Mepo5g03626 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo5g03626 347 SMART sant 66 114 IPR001005 -
Mepo5g03626 347 SMART sant 13 63 IPR001005 -
Mepo5g03626 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo5g03626 347 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mepo5g03626 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo5g03626 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03626 Mepo-Chr5 44843398 44845987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03626 1 347 MYB Transcription Factor Family AT3G01140 56.183 1.64e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g03626 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03626 K09422 - gmx:100101835 451.44