Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03614 ATGGCAAGGAAAAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTATGGGATGATATGATGAAAGAAGCTGCATCACTTGGAGGAGCTAGGCGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGTACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGAGGCGCAAACACTCGGACGAATTTCTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACCAATCTCCTCCTTCAAAGACTTAAAGAAAGGAATATGAGTAACTCTTGTTCTTCCTTTTCTTCGTCGAAATACACTTCCATGTTGGGAAGCTCAGGAGAGCTTAGGGAGCAACAACGAGCTAATGATCAGGATCATCAGGAGATGCAACAACAAGTGGATGCATATGGAGAAGTATCAAAAGATTTCTCAATTGACCAGTTCACTGATTTCCTTAATGATCATGAGGATTATAGCACAAGCAACAATGAATTGATCAATGATGCTGCTCAATTCGATTACATTTCGAGTAGTTTTGAATCGTGTTTAACTGAAAACAATGGCTGCAAGGAGGATGAAATGAATATGGAATCTAAATCAAACAATGTCACACAAACTTCAAGTGGTGATAGCAATTCAGAAGATGGTGAAGAGGAAGTCAATAATGATGTAAGTGCTGATGTTCCTGATTTTCGGTTTCTCGACGATATTGCTCCAACTAGTTACTACTCACCTTTTGAGATTGCTGAGGAAATGGAAGAGCAAATGGAGACAGAAAGCTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAGAGAATGAAATATGAGAGAAAATTTTCAGCTTCACTTTATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCTGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAAGAAGCATGTAACAAAAATAAACTTGAGAAGAAGAAGGTGGATGAGAAAAATGAAGAAAATAATGAAACTTCAACTGAAATGGATTCTTCTTGTTTGTCAAGTAATGATGGTGATCTTTTTCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTCAATTAG 1227 0.3773 MARKRKVSEVVEEGSMVWDDMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMSNSCSSFSSSKYTSMLGSSGELREQQRANDQDHQEMQQQVDAYGEVSKDFSIDQFTDFLNDHEDYSTSNNELINDAAQFDYISSSFESCLTENNGCKEDEMNMESKSNNVTQTSSGDSNSEDGEEEVNNDVSADVPDFRFLDDIAPTSYYSPFEIAEEMEEQMETESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNGRGISDQLNNLKEACNKNKLEKKKVDEKNEENNETSTEMDSSCLSSNDGDLFLWNSLDLPPICFVNLLENGSFN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03614 408 MobiDBLite consensus disorder prediction 356 378 - -
Mepo5g03614 408 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Mepo5g03614 408 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 Coils Coil 342 372 - -
Mepo5g03614 408 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Mepo5g03614 408 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Mepo5g03614 408 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Mepo5g03614 408 MobiDBLite consensus disorder prediction 140 162 - -
Mepo5g03614 408 MobiDBLite consensus disorder prediction 221 253 - -
Mepo5g03614 408 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03614 Mepo-Chr5 44692508 44693772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03614 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 8.96e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g03614 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03614 K09286 - gmx:100790398 482.256