Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03613 ATGAATCACTCAACTGAAACCTCAAAAGGTTCATTGGAAAATGAAAACTTGGAAACAAAAACCACAAAAAGCAAAAGGCATTGTGCTCGTGGTAGGGAGGATCACATCATTGCTGAGAGAAATCGAAGAGCGAAACTCACAGAGACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATTGAGGAAGGAAAGATTGATTTGAGTGGGCCCCATGCTCAGAAAACTTTCCACAGGGTTATGAGAAGAAAGTTAGGAACTTGCATTTTTTAA 279 0.3978 MNHSTETSKGSLENENLETKTTKSKRHCARGREDHIIAERNRRAKLTETFIALAALVPNLKKIEEGKIDLSGPHAQKTFHRVMRRKLGTCIF 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03613 92 MobiDBLite consensus disorder prediction 16 33 - -
Mepo5g03613 92 Gene3D - 14 86 IPR036638 GO:0046983
Mepo5g03613 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 92 IPR011598 GO:0046983
Mepo5g03613 92 MobiDBLite consensus disorder prediction 1 15 - -
Mepo5g03613 92 MobiDBLite consensus disorder prediction 1 33 - -
Mepo5g03613 92 PANTHER BHLH TRANSCRIPTION FACTOR 8 64 - -
Mepo5g03613 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 64 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03613 Mepo-Chr5 44689099 44690083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03613 19 68 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 46.000 1.74e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g03613 HLH 0.00027 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03613 - - tpra:123919463 74.7146