Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03599 ATGTGTTTGTGTTTGAGCAGGATGGATTCACAGATTAAGAACGCTCAAGTTGAGAAAGTTATAGGTCGTACTGGATCCAGAGGACAGGTCACTCAGGTTAGAGTCAAGATTATGGGAGAACAGAATCGCCACATCATGAGGAATGTGAAGGGCCCTGTTAGAGAAGGAGATGTCCTCACCCTACTTGAGTCGGAGAGAGAAGCAAGAAGACTCCGATAG 219 0.4612 MCLCLSRMDSQIKNAQVEKVIGRTGSRGQVTQVRVKIMGEQNRHIMRNVKGPVREGDVLTLLESEREARRLR 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03599 72 CDD S1_S28E 15 72 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo5g03599 72 FunFam 40S ribosomal protein S28 6 72 - -
Mepo5g03599 72 PANTHER 40S RIBOSOMAL PROTEIN S28 8 72 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo5g03599 72 SUPERFAMILY Nucleic acid-binding proteins 8 72 IPR012340 -
Mepo5g03599 72 Pfam Ribosomal protein S28e 11 71 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo5g03599 72 Gene3D - 5 72 IPR012340 -
Mepo5g03599 72 ProSitePatterns Ribosomal protein S28e signature. 63 71 IPR028626 -
Mepo5g03599 72 Hamap 30S ribosomal protein S28e [rps28e]. 8 72 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03599 Mepo-Chr5 44497582 44497800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03599 8 72 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 81.538 2.05e-31 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03599 K02979 - oeu:111370442 87.4261