Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03455 ATGTCTCGTTATTCCTCTTTAAATCCCTTCGCAACAATAACAACTAACTCACTATATTCCGATTCTGACACCGATTCACTGAGTCAATTCGTCACCGATCTCTATGAAAATCGTTCCCCCACCGACCCACCTTGTCCTTGGGACGACGAAGACGATGAAAATGATCCACGCATAAACCCTTTCTCTTACATCGCTGATTTTCAACCACCAGAAGAACCACAATTATGGTTAGGGTTTGGTGATGAACATGAATATGAAAATCAAACTCAATATAATGATGATAATTATGATGATGTTTTTGAATTTTCTTCATTAGTTGGTGGAGGTGATGGTGGTGATTCTGGTGGGCTTAGGGTTGTTGAATTCGGTACCGATTCGGAGTCGAGTGGGAATGATGAGGAGTTTGATTATGGTGGGGAGAATGATGATGAGAGGGTTAGTGGGTTGTGTTGGGATAGTCTTTGTTTGGAGGATGATCATAGGAGTGGTTTGAATGATTGGGAGGAAGTGATTGAAGGGAGAGTCAATGAGATTGAAGATTCGTCTAGTTTGTTGATTGATGAGGTTGAGGTTGATGTTGAGATTGATGAACAATCGATGGAGTCGGGGTTCGAGGGGGAAGAAGATGAAGCGGGGGAAGAGGCATTGAGGTATTTGGAATGGGAGATTTTATTGGCTTTTAATAATTTAGAGAGGAATGGTGGATTGGAACATGAAGATGAGAGTTTGAATAATTTGTATTTAGCTGTTCATGATGGGATTATATCGGGGAATACGGATTATGACATTCTTTTCGGACAGTTATTGGAGAATGACAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTCGTGGAGAATTTACCGTTGGTGGAGTTGACTGAGGAGGAGTTGAAAGAGAAGGATGTTGTGTGTGCTGTTTGTAAAGATGAGGTAACGGTGGAAGAGAAGGTGGGGAAGTTGCCTTGCTCACATTGTTACCATGGTGATTGTATTTTGCCGTGGTTGAATATTCGGAATACTTGTCCTGTTTGTCGGTATGAGTTGCCAACGGATGATGATGATTACGAGCAGAGTAAGGTTCGCAGGGTGGCTCGTGATCTGTTGGACTATGCTGCATAG 1125 0.4276 MSRYSSLNPFATITTNSLYSDSDTDSLSQFVTDLYENRSPTDPPCPWDDEDDENDPRINPFSYIADFQPPEEPQLWLGFGDEHEYENQTQYNDDNYDDVFEFSSLVGGGDGGDSGGLRVVEFGTDSESSGNDEEFDYGGENDDERVSGLCWDSLCLEDDHRSGLNDWEEVIEGRVNEIEDSSSLLIDEVEVDVEIDEQSMESGFEGEEDEAGEEALRYLEWEILLAFNNLERNGGLEHEDESLNNLYLAVHDGIISGNTDYDILFGQLLENDSGLKGSPPAAKSFVENLPLVELTEEELKEKDVVCAVCKDEVTVEEKVGKLPCSHCYHGDCILPWLNIRNTCPVCRYELPTDDDDYEQSKVRRVARDLLDYAA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03455 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 198 351 - -
Mepo5g03455 374 Pfam Ring finger domain 306 347 IPR001841 -
Mepo5g03455 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 353 IPR013083 -
Mepo5g03455 374 FunFam E3 ubiquitin-protein ligase RING1-like 267 353 - -
Mepo5g03455 374 SUPERFAMILY RING/U-box 293 354 - -
Mepo5g03455 374 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Mepo5g03455 374 SMART ring_2 306 346 IPR001841 -
Mepo5g03455 374 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03455 Mepo-Chr5 42632298 42634028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03455 221 361 C3H Transcription Factor Family AT3G02340 50.331 4.20e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03455 - - gmx:100812037 310.071