Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03396 ATGGATCGGGTGGTTGCAACAGTGAGCGGTTACCGTGAACCCAACCGATTCAATCTTATTAAGCTCATTTCGCGTTCTGGTGCCAGTTACGTTGGAGATATGTCGAAGTCAATTACGCATCTGGTGTGTTGGAAGTTTGAAGGAAAGAAGTATGACATTGCCCGTAAGTTAGGAATATATATAGTCAACCACCGTTGGGTTGAAAACTGTGTAAAGAAAGGAAGGCGTGTCCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTATTAATGGAAGTTCCAGTCAATGTTCAAGCAAGTACCTTATCCAAGAATAAAGTGGTCAGAGGCAGATCATGTGATATTGTGTCCGAAAGGCAAAATACTGACTTCAGTTCCGGGGTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTTTACTGAAACAGCATGGGGAGTCAAGTTCATATCCTCCTAGACTGTCAAGAAAAGGTAAAAGAAATAGAGGAAATGATGTTAGTACCACGGCTAGACATTCTCGTAAAGGAAGAAGGGTTGTGAAAAATGATGGTGAAGTGTCGATGGCCCCTATAATTTTAGATTTAAGCACAGACGACCAGCTTTGCGAAATAGATTGGCAAGACACTGATGCTGCAGCTACATCCACCCTTTATCGCCATGTCAATATTGACAATATTCAAGAAAATAGTGAAGGACTTGATGCTGGACTATCTAGTCAAAGTAGAACTATCGATGGAAGTTCAGATGGCATTGAGCAGAGCCGAGATTCAAATCATATATCTACTCTCAGAAATTCAAATTTGTTTATAGAAGACCCCCTTCCTCTGACACAAACATCAGCAGATTTATGTTCCAGTGCTGCTGAAAAGTTCCCTGATGGTGATGTGGTTGATAATTTTGATGACTCCCCTACTTCAAATGAGTTGTCATGTGTTATATGTTGGACAGATTTCAGTTCAACAAGGGGGATTTTGGAGTGCGGACATCGGTTTTGTTTTTCATGCATCCAGGGTTGGGTTGATCGCAGAAAAGCAATGGGGAAAGTTTCAAACTGTCCTTTGTGCAAGGCAAGTATTATGAAGATCATGAAAGTTGAGCATGCAGACACCACTGATCAAAAAGCATACTCCCAGACAATTCCATGTGATTACACTAGCTCAGATGTTTTTATCCCCATTGATCAAGAATTTCCAGACAATAGCTTAGAGTCCTCAGGTGCTTGTGTAATTTGCGGTGGCCGGGAACCAGAAGATCTACTTGAGAATTGTGATGTTTGTCGATGTCGAAGAATTCATTCTTATTGCATGGACCCTCCATTACGACCATGGACATGCACTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCGCTTATATTAG 1392 0.4145 MDRVVATVSGYREPNRFNLIKLISRSGASYVGDMSKSITHLVCWKFEGKKYDIARKLGIYIVNHRWVENCVKKGRRVPEDSYTLQSGHEVGPLLMEVPVNVQASTLSKNKVVRGRSCDIVSERQNTDFSSGVCGISVLEDSSLLKQHGESSSYPPRLSRKGKRNRGNDVSTTARHSRKGRRVVKNDGEVSMAPIILDLSTDDQLCEIDWQDTDAAATSTLYRHVNIDNIQENSEGLDAGLSSQSRTIDGSSDGIEQSRDSNHISTLRNSNLFIEDPLPLTQTSADLCSSAAEKFPDGDVVDNFDDSPTSNELSCVICWTDFSSTRGILECGHRFCFSCIQGWVDRRKAMGKVSNCPLCKASIMKIMKVEHADTTDQKAYSQTIPCDYTSSDVFIPIDQEFPDNSLESSGACVICGGREPEDLLENCDVCRCRRIHSYCMDPPLRPWTCTSCKELRMLYRNRLY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03396 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 461 IPR013083 -
Mepo5g03396 463 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Mepo5g03396 463 PANTHER F5A8.9 PROTEIN 137 461 - -
Mepo5g03396 463 Gene3D BRCT domain 1 83 IPR036420 -
Mepo5g03396 463 SMART BRCT_7 1 74 IPR001357 -
Mepo5g03396 463 MobiDBLite consensus disorder prediction 161 180 - -
Mepo5g03396 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 384 IPR013083 -
Mepo5g03396 463 MobiDBLite consensus disorder prediction 146 180 - -
Mepo5g03396 463 SMART ring_2 314 358 IPR001841 -
Mepo5g03396 463 ProSiteProfiles Zinc finger RING-type profile. 314 359 IPR001841 -
Mepo5g03396 463 SUPERFAMILY FYVE/PHD zinc finger 396 454 IPR011011 -
Mepo5g03396 463 Pfam Ring finger domain 313 359 IPR001841 -
Mepo5g03396 463 SUPERFAMILY RING/U-box 306 366 - -
Mepo5g03396 463 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Mepo5g03396 463 MobiDBLite consensus disorder prediction 236 260 - -
Mepo5g03396 463 Pfam twin BRCT domain 4 66 IPR001357 -
Mepo5g03396 463 SUPERFAMILY BRCT domain 2 85 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03396 Mepo-Chr5 41896425 41901153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03396 38 90 Core DNA Replication Machinery Family AT4G02110 48.148 1.33e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03396 - - cam:101495587 653.284