Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03322 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGAAAGACAACATTTCAAAAGAGAAAGAATGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCTAACTTTGAAGCTCAAGGACTTGCTGAACCGGAAACATGGCCTAAAGACAAAAGAGAGGTACAAAGAATCCTTCAAAAGTACTATAATACAACAAGTGACAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGAATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGATAAAGATGATGTATCCATCTTGGGACGAATCTTACAATTCTCTTGGATCGGAACAATTGAGGTCATTTGTTAGCATGTTGGGTTCCAAGCTTGATGCTTGTAATCAAAGGATGTTAATGCTTAAAGGAGATCTTAAGGGAAAAACAATAGCTTATGAATCACATAAGGTTGATAAACTTATAGGAACTCCTAACTTAGCCTCAAAGCCAAGTAGCTACTTCAATCTCATGCAAAACAACATGGCTGAAGCACAAATTCATCCTCCATTGATGAATATTAGTGATAAAACCCCATTAGGGTTTTGGCAACTTCAACTCGGACAAAGCTCTCAACCTTCTTCTATGATTTCCAATGCACAAAGCTCATACTATGTGGAGTCTCAAGAAGGTAGGTACCCACAATCTTACCCTTGCAAGCAGATTGATGTTAATTGGACCAATCGAGTTGATGCTAATGTTACGTGCGATCTGAAAATCGATATGAAAAGGAAGGATGGAGCTGAAAATGATGAAAACTTATCGCCATACTATTACAATGGAAATGCATCGACGATGCAATCATATCCCGTTGCTATCCATTCTCTTCCTTTCCAGAATCTTTCAAACCTACCACATGGATTTCAACTTAATGGATTCAATGATATGAATATGCTTCAAGCTCATAAGTTCAACTACATGGATGGAAGGAAGTAG 1032 0.3682 MGRGRISMELIQKEKSRKTTFQKRKNGLMKKVNEFSILCDVDVCVILYAPNFEAQGLAEPETWPKDKREVQRILQKYYNTTSDRRPKIYDVQEYFKERMKKVEFEISKVRKEKIKMMYPSWDESYNSLGSEQLRSFVSMLGSKLDACNQRMLMLKGDLKGKTIAYESHKVDKLIGTPNLASKPSSYFNLMQNNMAEAQIHPPLMNISDKTPLGFWQLQLGQSSQPSSMISNAQSSYYVESQEGRYPQSYPCKQIDVNWTNRVDANVTCDLKIDMKRKDGAENDENLSPYYYNGNASTMQSYPVAIHSLPFQNLSNLPHGFQLNGFNDMNMLQAHKFNYMDGRK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03322 343 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Mepo5g03322 343 CDD MADS 2 51 - -
Mepo5g03322 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Mepo5g03322 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mepo5g03322 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03322 Mepo-Chr5 40738784 40739815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03322 1 150 Type I MADS-box Gene Family AT5G55690 39.073 1.88e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo5g03322 SRF-TF 4.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03322 - - tpra:123913303 503.442