Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03098 ATGGACGACGATGACGTTAGGATCCTCGACTTCATTCCCAAAAATACCGTTTTTAGAAAACGTAAAAGAAACAACATCGAAGAGGAAGAGTCTTCAAATTCAAATAACACCCGGTTAGTATGCGAAATCTGCACGGAAACTAAAAGAATGAAGGACGTTTTCTACATCAGTGGTTGCTCTCATGCATATTGCTCTGATTGCATACCAAAGTACATCGATTCCAAGCTTCAAGATAACATCATCAACGTTCGGTGTCCTGTTTCCGCGTGCAATGGTTTGTTAGAAGCTGAATTTTGTCATTCTATTCTTCCGGTAGAGCTTTTTGAACGCTGGTGTAAGGCGTTGTGCGAGGCTTTGTTTGTTTCGGAGAAATTCTATTGTCCTTTTAGAGATTGTTCTGCTCTTTTGATCAAGGACGGAACTGAGGCAGTTAGAAATTCAGAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGTAAGATTCCATGGCATGAAGGGATTGAATGCGCTGAGTTTAAGAAGATGAATACGGACGAGAAGCGGGAAGAAGATCCCTGA 561 0.41 MDDDDVRILDFIPKNTVFRKRKRNNIEEEESSNSNNTRLVCEICTETKRMKDVFYISGCSHAYCSDCIPKYIDSKLQDNIINVRCPVSACNGLLEAEFCHSILPVELFERWCKALCEALFVSEKFYCPFRDCSALLIKDGTEAVRNSECPHCNRMFCAQCKIPWHEGIECAEFKKMNTDEKREEDP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03098 186 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 181 IPR031127 GO:0004842|GO:0016567
Mepo5g03098 186 SMART ring_2 41 88 IPR001841 -
Mepo5g03098 186 FunFam RBR-type E3 ubiquitin transferase 36 122 - -
Mepo5g03098 186 ProSiteProfiles Zinc finger RING-type profile. 41 87 IPR001841 -
Mepo5g03098 186 Pfam Zinc finger, C3HC4 type (RING finger) 41 86 IPR018957 GO:0046872
Mepo5g03098 186 SMART ibrneu5 109 170 IPR002867 GO:0008270
Mepo5g03098 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 122 IPR013083 -
Mepo5g03098 186 Pfam IBR domain, a half RING-finger domain 122 170 IPR002867 GO:0008270
Mepo5g03098 186 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Mepo5g03098 186 Gene3D - 125 176 - -
Mepo5g03098 186 SUPERFAMILY RING/U-box 120 175 - -
Mepo5g03098 186 SUPERFAMILY RING/U-box 36 118 - -
Mepo5g03098 186 CDD BRcat_RBR_unk 121 173 - -
Mepo5g03098 186 ProSiteProfiles TRIAD supradomain profile. 37 186 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03098 Mepo-Chr5 38064425 38064985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03098 41 175 C3H Transcription Factor Family AT2G19610 30.345 3.31e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03098 K11975 - twl:120005643 233.032