Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03006 ATGGATGGAGACATGGTACCTTGGTTTACACCCCAAATCGAAGAAGAGTGGTACATGAACAATATACTGCCTCATACTGAAGAATTTATCCCAAATCTTCAAAACTACACTCAACAACAAAACAATGATGGTCCTTCAGATCCAAACACTTCTGTTTTTAAGCACCATTTAGGTTCCTCGTTTTCTTTGTCATCACCCAAATCCAATTTCTCAAATATACTAAATATTAATGACAACATCAATATCAATGGCTCCACCACCACCACCAACAACAATGACAACAACAAGCCATTCGGTAGTGTCTTCAATTTAGAATCCCAAGGTTTTTTTCAAACTCCATTGTCAATTCCGCGGTTAACCTTGACATGGTTGAACAGGTTTGAGAAGAAGATGAGAAAAGATGGAAATGGAGAGGTTGACAAAGGATTGAATTACAACTCTAATGAGAGCGTTGATATTGGGAAGATGAGGAACCACGGGAAAAATGAGGACAATAATTATAACACAAATACCATCATAGATAATTTTGATGATGAAAATTGTGTTGGTGAGGGGGACCGAAAAGGGAAGAAGAAGGAAAATCCATCAAAGAGTCTCATCGCTGAGAGGAAGCGAAGGAAGAAACTCAAGAATAATATGCACAAGCTTCGTTCTGTTGTGCCAAAGATTAGCAAGACAAGTTTATGTATTTCATTTCTTTTACCGATGGATAAAGTTTCAATACTTGGGGATGCTGTTGACTACTTGAAGGAGTTACAACAACAAATTAATGATCTTCAAAGTGAGATAGAATCAAGCTCTCATAAATCATTTATGTCATTGCCTAAGACATCTACCATGTCAACCCTTCCGGTTCAACTTAAAGAACAGTTATTTCAAAATAGTGTATCAAGCCTTAAAAACCAACCAACAGAGGTAGAGGTTAGGGTAAGGGAAGGGGGGATTGTCAACATACATATAATTTGTGCTTCCAAACCAGGTGTTTTGGTCTCGACTATGATGGCATTGGATAGCCTTGGATTGGATGTTCACCAGGCTAACATAAGTTGTTTCAATGATTTTTCTCTAGATGTATTCAAAGCTGAGTTAAGTGATCCTATGGTGAGTGTGAATATTTGTGGTGACTATCAAGTGGGATTATTTTCTAAGCAACACAATAAAGATAAGGAGTTGGCCCCCGAGAAAATAAAAGAAATATTGTTGAAGGCATTGGATTCCTATTGA 1224 0.3742 MDGDMVPWFTPQIEEEWYMNNILPHTEEFIPNLQNYTQQQNNDGPSDPNTSVFKHHLGSSFSLSSPKSNFSNILNINDNININGSTTTTNNNDNNKPFGSVFNLESQGFFQTPLSIPRLTLTWLNRFEKKMRKDGNGEVDKGLNYNSNESVDIGKMRNHGKNEDNNYNTNTIIDNFDDENCVGEGDRKGKKKENPSKSLIAERKRRKKLKNNMHKLRSVVPKISKTSLCISFLLPMDKVSILGDAVDYLKELQQQINDLQSEIESSSHKSFMSLPKTSTMSTLPVQLKEQLFQNSVSSLKNQPTEVEVRVREGGIVNIHIICASKPGVLVSTMMALDSLGLDVHQANISCFNDFSLDVFKAELSDPMVSVNICGDYQVGLFSKQHNKDKELAPEKIKEILLKALDSY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03006 407 MobiDBLite consensus disorder prediction 180 200 - -
Mepo5g03006 407 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 58 401 - -
Mepo5g03006 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 252 IPR011598 GO:0046983
Mepo5g03006 407 Gene3D - 185 269 IPR036638 GO:0046983
Mepo5g03006 407 Pfam Helix-loop-helix DNA-binding domain 200 253 IPR011598 GO:0046983
Mepo5g03006 407 MobiDBLite consensus disorder prediction 180 208 - -
Mepo5g03006 407 Coils Coil 242 269 - -
Mepo5g03006 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 268 IPR036638 GO:0046983
Mepo5g03006 407 SMART finulus 199 258 IPR011598 GO:0046983
Mepo5g03006 407 CDD ACT_UUR-ACR-like 318 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03006 Mepo-Chr5 36801585 36804361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03006 195 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.598 2.40e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g03006 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03006 - - mtr:11429864 432.18