Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02997 ATGGCAAGGGCTCATCATCCATCTCTCGCGCCTTCGCAATCTCAAAACATGGTTAATGTTAACGACTATGGAGCCAAATCTAATGATGGACAAGTTGATAATGAGGCATTTGAAATGGCATGGAATGAGGCATGTTCTAATGGGAAGGTTCTTATGGTACCTAAACAAAGTGTTTATCATCTAAAGCCTATAACATTTTCAGGGCCATGCCAACCCAACACGGCATTAAAGATCTATGGAACAATCAAAGCATGGCCTAAAATTTCAGCATATGGAGCAGATAGAAAGCTTTGGATCAAGTTTGAGAATGTCACAGATCTCGTAGTTGATGGTGGTGGTACCATTAATGGAAATGGAAGAATATGGTGGGAGAATTCTTGCAAAGTCAATGAAAGCCTTGCTGTGACTTTCGATGAATGCAATAATTTGAAAGTGGATAAGATAAGGTTCAGAAATGCACAACAAATGCATATAAGGATTGAAGGATGCAACAATGTTTGGGCATCAAATCTAATAGTCACAGCACCTGGGCATAGTCCCAACACTGATGGAATTCATATTACTCATTCACAAAATGTTTTCATAACCAACAGCACCATTGGGACAGGTGATGATTGTATTTCAATTGTAAGTGGGTCCAAAAATGTTCGAGCAACAGATATTACTTGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGGAGGTAACACAGAAGCTGAAGTGTCTAATGTGGAAGTGAACAGAGCCACACTAATAGGAACTACAAATGGAGTCAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCAAGAAACATCAAATTTATCAATATAGCTATGCGAAATGTGACTAATCCCATAATCATAAATCAAAAATATTGTGACCAAAAAAAGAAATGTCAAGAGCAGAAATCAGCCGTGGAATTGAGCAATGTGATGTACCAAAACATAAAAGGAACAAGTGCTTCAGAAGTTGCAATCAAACTTGAATGTAGCAAAGCTGTCCCATGCAAAGGAATTCACTTGCAAGATGTGAAATTAACGGCAGAAAACAGTAGTGACACCATTGCAAAATGTGACAATGTTAAATATTCAAATAGTGGAATGTTCTTTCCTAAGTGTCACCCTTGA 1137 0.387 MARAHHPSLAPSQSQNMVNVNDYGAKSNDGQVDNEAFEMAWNEACSNGKVLMVPKQSVYHLKPITFSGPCQPNTALKIYGTIKAWPKISAYGADRKLWIKFENVTDLVVDGGGTINGNGRIWWENSCKVNESLAVTFDECNNLKVDKIRFRNAQQMHIRIEGCNNVWASNLIVTAPGHSPNTDGIHITHSQNVFITNSTIGTGDDCISIVSGSKNVRATDITCGPGHGISIGSLGGGNTEAEVSNVEVNRATLIGTTNGVRIKTWQGGSGYARNIKFINIAMRNVTNPIIINQKYCDQKKKCQEQKSAVELSNVMYQNIKGTSASEVAIKLECSKAVPCKGIHLQDVKLTAENSSDTIAKCDNVKYSNSGMFFPKCHP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02997 378 MobiDBLite consensus disorder prediction 8 25 - -
Mepo5g02997 378 Pfam Glycosyl hydrolases family 28 50 367 IPR000743 GO:0004650|GO:0005975
Mepo5g02997 378 SUPERFAMILY Pectin lyase-like 10 377 IPR011050 -
Mepo5g02997 378 PANTHER - 16 364 - -
Mepo5g02997 378 SMART pbh1 243 264 IPR006626 -
Mepo5g02997 378 SMART pbh1 190 211 IPR006626 -
Mepo5g02997 378 SMART pbh1 272 293 IPR006626 -
Mepo5g02997 378 SMART pbh1 163 189 IPR006626 -
Mepo5g02997 378 Gene3D - 3 375 IPR012334 -
Mepo5g02997 378 FunFam Polygalacturonase QRT2 4 377 - -
Mepo5g02997 378 MobiDBLite consensus disorder prediction 1 25 - -
Mepo5g02997 378 ProSitePatterns Polygalacturonase active site. 220 233 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02997 Mepo-Chr5 36745338 36749496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02997 10 376 Glycoside Hydrolase AT3G07970 57.937 3.43e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02997 K01184 - gmx:100796446 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g02997 5 36745338 36749496 Mepo5g02997 5 36745338 36749496 ECH
Mepo1g03476 1 40364521 40365945 Mepo5g02997 5 36745338 36749496 PCT