Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02990 ATGGCAGCACTGCGAGAAATTTCCGCAACCTTGCTATCTCGCTCAAAACCCCACACCTCTCTCTTTCAACGACTCTTCCTTCGTAGAAAAACTTCCAAGATTTTTGTTAAAGGTTTAGCCTTTTCTACTACAGAGGAGAAATTAGCTGAAGCTTTTTCTCAATATGGAAATGTTCTCAAAGCTGATGTAGTATTGAATAAAGCCAAGAAAAGATGCAAAGGTTTTGGATATGTGACTTTTGCTGAGGAGGAAGAAGCCCGGAAGGCACAAATTGGCATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATGGATCCACCTAACGAGCAGAAGAAAAAAATAAAGCAGGCAACTAAAAATACAGAGGTTGACAATGAAGATGTGCAAATGGATTGA 405 0.3951 MAALREISATLLSRSKPHTSLFQRLFLRRKTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADVVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYVDMDPPNEQKKKIKQATKNTEVDNEDVQMD 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02990 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Mepo5g02990 134 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 111 - -
Mepo5g02990 134 Gene3D - 21 132 IPR012677 -
Mepo5g02990 134 SUPERFAMILY RNA-binding domain, RBD 29 115 IPR035979 GO:0003676
Mepo5g02990 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Mepo5g02990 134 SMART rrm1_1 33 106 IPR000504 GO:0003723
Mepo5g02990 134 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02990 Mepo-Chr5 36518967 36524156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02990 26 120 Eukaryotic Initiation Factors Gene Family AT1G71770 37.895 3.98e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02990 - K13195 gmx:100527061 156.377