Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo5g02954 | ATGTCCAACAGGGTTTGCAAGTTTTATGCGCGAGGCGTATGTTTGAAAGGCGACCAATGTGATTTTTCTCATCAGAGAAAGGAGACTGCATCTGATATTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCACGTCCGAGCTTCTCAAGCATCATCTTCAGGATCTATGGTTTCAGATTCTGCTGTGCCTGTGGCTCGTAGTGCTAAAGTAGCATCAAGTTGGGTTCCGAAAGTTACAAAGGTTACTTTATCTGACAAGCGCGGCGTAAAGGGTTTACAACGCAAGCATCAGGACTCTACCGATGTTGGTGAATCCAGTACTGGTAGTGCTAGACCACATGAAAATTTGTTTTGTAAATTTGCTGCTGCCAACTGCCCCGGTGGATGTTCTCGTATTCACGGAAATCAATGCTTGTACTGTAGAAAATATTGCCTGCATCCTACTGATAAAAAGGAAAAAGAAAATCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAACAGCGAAGAGATAGAATGCAATGTTTGTCTCGAGCGTGTCCTTTCGAAACCCAAGCCATCGGAATGTAAGTTTGGGTTGCTTCCAGAATGTGATCATGCTTTCTGTTTGTCATGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTACAATGGAAATCGGTAGTAACACCAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGAAATTGTCCATTTGGGGCAAGCTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGAGACACCGCAGGCCACCACCTCAACGCAGACAAAACCATTTCGATATGCATGACATGTTGGATGTACTCGGTGAGGTTGATCTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGATTTTTTTGAGGGAATGGATCCATTTGAGATGATGGCATTATCAGATTCGCTGGCTGGCGGTTCAGGTCCTTGTTTGGGTCCTTTTGATTCAGACGATGATGATGATGGGTTTCGTGTTTCTCAAATGGCTGCTATGTCAGAGGCCATGGCTCTTGGGATGGATGCTTTTGGCCCTGATGACGACGATGAGGAAGAGTTTAATGTTTTTCGAATGGCTGCTATGTCAGAGGCCATGGCTTCTGGGATAGATGATTTTGGCCCTGATGATTTTCATGGAATTGATCCTATGGATGCAGCTTTGATATCAATGATGATGCATTCTCATATGGACGACGAAGATGATGATGAAGAGTACGAGGATGAAGAATACACTGATGATGAATATTAG | 1443 | 0.4276 | MSNRVCKFYARGVCLKGDQCDFSHQRKETASDICSYYQKGSCAYGSRCRYKHVRASQASSSGSMVSDSAVPVARSAKVASSWVPKVTKVTLSDKRGVKGLQRKHQDSTDVGESSTGSARPHENLFCKFAAANCPGGCSRIHGNQCLYCRKYCLHPTDKKEKENHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRSSAPTSTMEIGSNTNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWRHRRPPPQRRQNHFDMHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDDDGFRVSQMAAMSEAMALGMDAFGPDDDDEEEFNVFRMAAMSEAMASGIDDFGPDDFHGIDPMDAALISMMMHSHMDDEDDDEEYEDEEYTDDEY | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo5g02954 | 480 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 258 | IPR013083 | - | |
| Mepo5g02954 | 480 | MobiDBLite | consensus disorder prediction | 459 | 480 | - | - | |
| Mepo5g02954 | 480 | MobiDBLite | consensus disorder prediction | 462 | 480 | - | - | |
| Mepo5g02954 | 480 | CDD | RING-HC_MKRN | 184 | 247 | - | - | |
| Mepo5g02954 | 480 | SMART | ring_2 | 186 | 246 | IPR001841 | - | |
| Mepo5g02954 | 480 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 247 | IPR001841 | - | |
| Mepo5g02954 | 480 | SUPERFAMILY | CCCH zinc finger | 31 | 52 | IPR036855 | GO:0046872 | |
| Mepo5g02954 | 480 | Pfam | RNA-binding, Nab2-type zinc finger | 281 | 302 | - | - | |
| Mepo5g02954 | 480 | Pfam | RNA-binding, Nab2-type zinc finger | 6 | 24 | - | - | |
| Mepo5g02954 | 480 | Pfam | Zinc finger, C3HC4 type (RING finger) | 186 | 246 | IPR018957 | GO:0046872 | |
| Mepo5g02954 | 480 | PANTHER | MAKORIN-RELATED | 1 | 347 | IPR045072 | GO:0000209|GO:0061630 | |
| Mepo5g02954 | 480 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
| Mepo5g02954 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 28 | 55 | IPR000571 | GO:0046872 | |
| Mepo5g02954 | 480 | ProSitePatterns | Zinc finger RING-type signature. | 210 | 219 | IPR017907 | - | |
| Mepo5g02954 | 480 | MobiDBLite | consensus disorder prediction | 94 | 117 | - | - | |
| Mepo5g02954 | 480 | Pfam | CCCH-type zinc finger | 33 | 52 | IPR041367 | - | |
| Mepo5g02954 | 480 | Gene3D | - | 1 | 68 | - | - | |
| Mepo5g02954 | 480 | SUPERFAMILY | RING/U-box | 176 | 253 | - | - | |
| Mepo5g02954 | 480 | MobiDBLite | consensus disorder prediction | 94 | 109 | - | - | |
| Mepo5g02954 | 480 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
| Mepo5g02954 | 480 | SMART | c3hfinal6 | 28 | 54 | IPR000571 | GO:0046872 | |
| Mepo5g02954 | 480 | SMART | c3hfinal6 | 276 | 304 | IPR000571 | GO:0046872 | |
| Mepo5g02954 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 305 | IPR000571 | GO:0046872 | |
| Mepo5g02954 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo5g02954 | Mepo-Chr5 | 36125868 | 36131731 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Mepo5g02954 | zf-C3HC4 | 1.6e-06 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo5g02954 | K15687 | - | gmx:100788886 | 639.802 |