Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02916 ATGGCTTCTTTACTCTCACAACTCAATTTCCTTTCTCTAACTCACAACACTCACACAAACATTACCTTAAAACCCAAAACGACAACACCTTCTTCTCTTGTCGTTCCAACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCCACGGTTGATTCTCCTGCTGTTAGAAAACTCTATGTTGGTAACATTCCTCGTACTGTTAGTAATGATGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTAAAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAGGAGGTTTGCCGGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGCGCTAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGCTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATCCGCGTGAATAAGGCGTAG 708 0.4096 MASLLSQLNFLSLTHNTHTNITLKPKTTTPSSLVVPTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02916 235 Gene3D - 37 146 IPR012677 -
Mepo5g02916 235 SUPERFAMILY RNA-binding domain, RBD 44 138 IPR035979 GO:0003676
Mepo5g02916 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Mepo5g02916 235 PANTHER OS02G0815200 PROTEIN 55 234 - -
Mepo5g02916 235 CDD RRM1_PSRP2_like 61 140 - -
Mepo5g02916 235 SUPERFAMILY RNA-binding domain, RBD 154 235 IPR035979 GO:0003676
Mepo5g02916 235 FunFam 30S ribosomal protein 2, chloroplastic 146 235 - -
Mepo5g02916 235 Gene3D - 147 235 IPR012677 -
Mepo5g02916 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 235 IPR000504 GO:0003723
Mepo5g02916 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 132 IPR000504 GO:0003723
Mepo5g02916 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 231 IPR000504 GO:0003723
Mepo5g02916 235 SMART rrm1_1 61 134 IPR000504 GO:0003723
Mepo5g02916 235 SMART rrm1_1 160 233 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02916 Mepo-Chr5 35620971 35626482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02916 25 232 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 2.12e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02916 K13126 - gmx:100783567 308.531