Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02874 ATGGAGCAACATCAACGTCCTACAAGAAGAAGTGTGTCCTTCGAAGACAACGACTCGGTTATGATTTTGGATGCTATTGATCTAAATCCTCCTCCTCTTTATCACACTCTTACTAGAAATCCATCAAGAAATTTCACAAGAAATCCATCAACGACTACTCCTTATGTTGATGGCCACTATATTTTCCATGTTATCAACGAGAATCATACTAGTAGAAGAAGTACTGTCAGACATGTTTATCACAATCTTCCAAGAGTCGAAATTGAAGAAGGAATGAAGTGTGAAGCATTGATGTGTTCTATTTGTTTGGCGGAGCTTTCAGTTGGGTCGAAAGCAATTCGGTTGCTTTGTTTGCATATCTACCACGATGAGTGTATCATGAAATGGTTAGATAGATCGAACACATGCCCTATGTGTCGTCAGAGTGTATCTCATGTTTCTTCATGA 447 0.3893 MEQHQRPTRRSVSFEDNDSVMILDAIDLNPPPLYHTLTRNPSRNFTRNPSTTTPYVDGHYIFHVINENHTSRRSTVRHVYHNLPRVEIEEGMKCEALMCSICLAELSVGSKAIRLLCLHIYHDECIMKWLDRSNTCPMCRQSVSHVSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02874 148 Pfam Ring finger domain 98 140 IPR001841 -
Mepo5g02874 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Mepo5g02874 148 SMART ring_2 99 139 IPR001841 -
Mepo5g02874 148 ProSiteProfiles Zinc finger RING-type profile. 99 140 IPR001841 -
Mepo5g02874 148 PANTHER SI:CH211-59O9.10 3 144 - -
Mepo5g02874 148 SUPERFAMILY RING/U-box 77 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02874 Mepo-Chr5 34922504 34922950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02874 66 140 C3H Transcription Factor Family AT1G14200 37.333 1.27e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02874 - K22378 mtr:11441714 127.487