Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02870 ATGGAGCCGCAACAAGGAAGATTAATACCTTTGGAAGTTACACTTGTACCTTGGAATCGTATTAATTACAATGGTGGTGTCAATGAAATATTTCTCGATGCTCTTGATATAATGGATGCTTTTGGTTTCACACCCATCTCTCTCAACAATCAAACTCTTTCAAGACTGTTTGGAACAAATTGCATGCAACCTAGAGTAACTACTCATGATGGCTTGCCTGTTTATGCTCATGATGACCACCATATTTTTGACACGGACCCTCTTAATGAAGACCTAATAGTACATGTTGAGGGAACCAATGCGAATGATGAAGAAAGCCCAACTATAGGCAAGCAACCATCCAAGAAACGAGAAGAAAGATCAACTCTAGGAAAGTGTCGATCCAAGAAACGTAAAGAGAGACCAACTCTAGGCAAGCGTCCATCCAAGAAACGAAAACAAAGCACAACTTTAGGCAAGCGTCCATCCAAGAAACCAGCATGGATGGATGATTATGTTGAAAAAGAAATTCCAAGTGGAGTAATGGAGCAACAACCAAGCAATATAAGAAGTGATTATGTAATGATTCTCGATGCTGTTGATTTATATCTCGCTCGTCGTCGTCATACTCATTATACAAATCGACCAACAAGGTTCACTCTCTTGCGTCCTTCTGTTGTTCGCTACCATAACCTCATCAACGAGGTTCAAGCTACTACAAGAAATACTGAAATTATCCAACGTCATTCTTATCGGAATCTTTCAAAAATTAGAGTTGAAAAAGGAAAGGAGTCTGAAGCAATGATGTGTTCTATTTGTTTGGCGGAGCTTTTGGTTGGAACGCAAGCAACTCGGTTGCCGTGTTCACATTTTTATCACGAAGGATGTATTCTGAAATGGCTAGGTAGATCAAACACTTGCCCTTTGTGTCGTCAAATTGTTCCTAATATGTGA 933 0.3976 MEPQQGRLIPLEVTLVPWNRINYNGGVNEIFLDALDIMDAFGFTPISLNNQTLSRLFGTNCMQPRVTTHDGLPVYAHDDHHIFDTDPLNEDLIVHVEGTNANDEESPTIGKQPSKKREERSTLGKCRSKKRKERPTLGKRPSKKRKQSTTLGKRPSKKPAWMDDYVEKEIPSGVMEQQPSNIRSDYVMILDAVDLYLARRRHTHYTNRPTRFTLLRPSVVRYHNLINEVQATTRNTEIIQRHSYRNLSKIRVEKGKESEAMMCSICLAELLVGTQATRLPCSHFYHEGCILKWLGRSNTCPLCRQIVPNM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02870 310 SMART ring_2 263 303 IPR001841 -
Mepo5g02870 310 Pfam Ring finger domain 262 304 IPR001841 -
Mepo5g02870 310 MobiDBLite consensus disorder prediction 98 163 - -
Mepo5g02870 310 MobiDBLite consensus disorder prediction 127 152 - -
Mepo5g02870 310 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Mepo5g02870 310 MobiDBLite consensus disorder prediction 109 126 - -
Mepo5g02870 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 309 IPR013083 -
Mepo5g02870 310 SUPERFAMILY RING/U-box 244 308 - -
Mepo5g02870 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02870 Mepo-Chr5 34879678 34882048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02870 165 308 C3H Transcription Factor Family AT3G02340 30.556 3.92e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02870 - K22378 mtr:11441714 222.631