Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02835 ATGGAAGAAGATCAAGAAATGATGAAACATGTGTGCAAATTCTGCAGAAAGAGTTTTCCTTCTGGTAGATCATTAGGTGGTCACATAAGGTCTCATGATCATGATCATGATGATTATGATCATGATGATGATGGTGATGAGTTTGTTGTTGCTGTAAGAAGAAGAATGAAGAAGAAAGAAGGTTATGGTCTTAGAGAGAATCCAAAGAAAACATGGAGAGTACTCACTGATTCAACTAATGAACAAGAGATTCAAGATCCTTTTGATGTTGTTTTGGATAAATTGTGTAAAGAATGTGGTAAAGGGTTTCAATCTATGAAAGCTTTGTTTGGTCACATGAAGTGTCATAAGAAGAAGAATAGTTTTGAATTGGATGAAGAACAAGAAGAAGAAGAAGATTCTAATGCAAGTGTTCTTCCAAAGAGAAAGAGAAGATCCAAAAGAAAGTTAAGAACAAGGTACATAAAGAGTAACAATACTTCTTCTTCTGTTGTGAATTTTGGTGATAATTCTTTAGATTCATGTTCTGTTTCTGAGGATGAAAAGGATCAAGAAGAGGTTGCTATGAGTTTGATAATGCTTAGTAGAGATGTAAGACCTTGGTTTGGTATCAATTCTATTGCTGAATTTTCTGATAATAGTGATGATAATGATAATGATGAGAATTCTTTGGAATTGGAAGCTCCATTAACTCATTTAGCTTCTAAGATTGATGTGAAAATGAACAAAAAACCAAAGAAGTTGGATTTTGGTGATATTGTTTCTTCAGATGTAAAGTCCAAAGGGAAAAGTTTAGAAGTTTTTGATAATGAGAGTGAAGGAAATGATGATGGATTGAAGATGAAGAAAGCTAGAGTTTCTGTTGTTGAGAATGGAAAGGATGAGGTTGATTCTGATTTAGCATTTGAGGTCAATTTAAGAACAAAATCAGGTACTAGTAATGGTACTTCAATGAAGGAAAATTTTGTTGATTCTGAAACTAAGGTTACACTTACATCAGAATGTGAATTCAGGAAGAGAAAATATCAGAAGAAAGGAAAATTTGAATGTGCTACTTGCAACAAAAAATTTCAATCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAGGACTAAAGGGTTTTCTGCTTCAAGAAATGATCAAATTAGTGAAAATGGAAACACTACTGAATTGGAATTGGAAGTAGATGTGGAGATTAATGTAAATGGTGAGGGAAGAATGGTAGAAAGTGAAAGAGTTGTGCTTAATGAAGAAGTTCTTGGAGTAAGGGATTATCTTGATCTTAATCTTCCTGCTGCAAGTATTGATGATGAAAGAAATGGTCATTCTGAGATTTACAAACCATGGTGGTTAGTTGGAAGCAGTCTCAAGCAAGAGGCAATGATAGGTCTACTATCAAACTAG 1410 0.3383 MEEDQEMMKHVCKFCRKSFPSGRSLGGHIRSHDHDHDDYDHDDDGDEFVVAVRRRMKKKEGYGLRENPKKTWRVLTDSTNEQEIQDPFDVVLDKLCKECGKGFQSMKALFGHMKCHKKKNSFELDEEQEEEEDSNASVLPKRKRRSKRKLRTRYIKSNNTSSSVVNFGDNSLDSCSVSEDEKDQEEVAMSLIMLSRDVRPWFGINSIAEFSDNSDDNDNDENSLELEAPLTHLASKIDVKMNKKPKKLDFGDIVSSDVKSKGKSLEVFDNESEGNDDGLKMKKARVSVVENGKDEVDSDLAFEVNLRTKSGTSNGTSMKENFVDSETKVTLTSECEFRKRKYQKKGKFECATCNKKFQSYQALGGHRASHKRTKGFSASRNDQISENGNTTELELEVDVEINVNGEGRMVESERVVLNEEVLGVRDYLDLNLPAASIDDERNGHSEIYKPWWLVGSSLKQEAMIGLLSN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02835 469 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Mepo5g02835 469 Gene3D Classic Zinc Finger 1 120 - -
Mepo5g02835 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Mepo5g02835 469 SUPERFAMILY beta-beta-alpha zinc fingers 95 370 IPR036236 -
Mepo5g02835 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Mepo5g02835 469 ProSitePatterns Zinc finger C2H2 type domain signature. 350 370 IPR013087 -
Mepo5g02835 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 348 375 IPR013087 -
Mepo5g02835 469 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 392 - -
Mepo5g02835 469 SMART c2h2final6 348 370 IPR013087 -
Mepo5g02835 469 SMART c2h2final6 10 32 IPR013087 -
Mepo5g02835 469 SMART c2h2final6 94 116 IPR013087 -
Mepo5g02835 469 Pfam C2H2-type zinc finger 96 119 - -
Mepo5g02835 469 Pfam C2H2-type zinc finger 10 32 - -
Mepo5g02835 469 Pfam C2H2-type zinc finger 348 372 - -
Mepo5g02835 469 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02835 Mepo-Chr5 34363679 34365088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02835 1 213 C2H2 Transcription Factor Family AT1G26610 40.265 5.10e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g02835 zf-C2H2_6 9.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02835 - - tpra:123917472 551.977