Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02824 ATGGAACTGACAGAAGAACAACGGAAACAAATAGAAGCGAATCGACTCGCTGCAATCGCAAAACGAAAAGCATTCTTAGAATCCAATTCCCATCAACAACAACAACGAAACCCTTGGCAACTTTTCAAATGCCAGAAAATTTCTCAACCTAAACCTCAACCCGATTTCAAATTCCTCGCCAGGCTTGAAATTTGTTCTCATGATTCTTTCACAATCACGCCTCTTCCGGTACCATATTTCGCTTTTCCTAGCTTCGATGTTTGTTTCGGCATTCTCAATAACATTCTCGCACAAATGAATGTAGATCCATCACATTTTACTCAAACAAGCGCGGGTGGGAAAGCCTGTGTGTTCAAATTGGCAGACTACCGTAGCGTTTTGAAGCTGTTAAAGGCGGAGATTGAGGTGGAGGAGATTCCTTGGAGCACTTTCAATGTTGTTGAGAAGCTTTCGCATTTGGAAGGGAGGTGGACTCCGGTGAGGCCGGAACATTTGAACGATGATGAGGTTGATGGTTTGATCGGAAAGTTGCCTAAGAGTTTATTTGATGTATTGTTGCCGTTTCAAATGGATGGTTTAAGGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACGCTTCAGGCTATAGCTATTGCGGGATGTTTCATCGATGAAGGATCTATACTTGTTGTCTGCCCTGCTGTTTTGCGGTATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTTTCTGCTTGCCTTCCGATATTCACCTCGTTTTTGGCCATCAAGACAATCCTGTAAATCTAACAAGATGCCCTAGAATTGTGGTCATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTCTGATTGTTGATGAATCTCATCATGTACGCCCTACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGACGTGGCTTCAGAAGTCAAGCGTATAGTTCTGCTATCAGGGACACCTTCTTTGTCAAGGTTACCGTTCGACATATTTCATCAGATAAATATGTTATGGCAACCTGCTAATTCAGTTTTCGGTGAAATGCTTCTATTTTACAGGCCAGGTTTGTTGGGGACAACAAAATATGAGTTTGCCAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTGAAGAGATCAGATATAGTTGCCGCAAAAACTGCAGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGATATGCCTTTGGACAGTTTGGATGAACATGATGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGATATGCCTTTGGACAGTTTGGATGAACATGATGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGATATACCTCTGGACAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAGCTTGGAATTGCAAAACTATCTGGGTTTCGTGAATGGCTTTCATTCCATCCACTTATTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACGCTACCCAGAGATAGACAATCCGCAGTAACCTCATTTCGATCATCGCCGGAGATTAAAATTGCGATAATAGGTGTTCTAGCAGCAGGTTTTGGACTTGATTTCTCGGCAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGAGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTGGGATGAATCACATTGGAAATATTTGAACACAAGTTTGCATCGTGTTTCATCTACAACTGATGGCAAATATGATGCGGTGAAAGGGCTAGAGGTTGAACGTGTTTCTTTTCTAAACCCATCCTCAAAAATTGACAGATCTGAAGAACAATCTGCATCTGAAGATGCATCAGTTGAAACACAGTTGGATAGGCAACCCTCTGCAGGGAAATCAAATGAAACAGAAGTAAACCAAGATGATGAATCTGGATTTGTAAACAATATAAGTCAGAGTGCTAATGTTATGGTTGATAGTGATTCCTGCATAGATTTAGGTCAGGCTTCAGTTTTGGATGGAAATCTTGATGCAGATGTTTTTTATGCTGGGGATAGATGTTCTGAAGAGAGTTTAGAGGACAAAGATAACGTAATAGAGGATAAGAAATCAACTTCAACAACAGATGCAGATGACAACCAGCCCACTCATCCTGTTGAAGCCGAAGAACATTGTTCTCATCAAGTTAATTCTCTGCGGTTTGAGGTTAGCCCATACACCGGAAGGATACACCTCTATACGTGTATTTTGGGTAAAGATGCAAGACCACAGCCACTTAATGAAAATTTCCGACCAGAGGACCTTGAGTTGCTTAGTCCTGCTGATGCTGATGAGAAACGGTGTATAGAGTCTGCATCTGTCAAGGATAACTCTGTTTATAGAAACGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAGGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTAATAACCACAACAACAAGGGACTGATAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAGTGGACATCAGTTATCCCTTACCATCAGATGCTGTTTGGAAAAAGGTTTATCTTAGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGCCCGAAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTAGCAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGCAACCTTGTCTGCCATCAAGAGTATCGGATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGAATATAAGACCTTTGTCCCTGGAAAGACGACGAGGGTATATTGAAAAAGTAGCACCAAATATTGCAAAGAGGAAGAAGATGTTCGAGAAGCTTATCAAAGATCCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAGCTTGAAAATATGAGAACTCTGTGTGTGGCCTGCCATCACGATGTTACTGCTGTACAATGTGCTGAGCGGCGCATTATAAGAGCAAATGCCCGTAAACAACTAAAAGTATTGATGGATACCATGAAAAATAATACGAAGGGTGCAGCTGGTAATAATAATAATGAGGTCCTAATTTTTCACGGGGTGCAAGAATGTATGCACGAGGATGATATTTTAGTCCCTGTTCCTGGAAGTGCCTATTCGCTAGCTAACAGCCAAGACAGTGGAGAGGCAGCCTGTTAA 3672 0.4164 MELTEEQRKQIEANRLAAIAKRKAFLESNSHQQQQRNPWQLFKCQKISQPKPQPDFKFLARLEICSHDSFTITPLPVPYFAFPSFDVCFGILNNILAQMNVDPSHFTQTSAGGKACVFKLADYRSVLKLLKAEIEVEEIPWSTFNVVEKLSHLEGRWTPVRPEHLNDDEVDGLIGKLPKSLFDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFIDEGSILVVCPAVLRYSWAEEIERWLPFCLPSDIHLVFGHQDNPVNLTRCPRIVVISYTMLHRLRKSMLERKWALLIVDESHHVRPTKKTSEPGEIKAVLDVASEVKRIVLLSGTPSLSRLPFDIFHQINMLWQPANSVFGEMLLFYRPGLLGTTKYEFAKTYCDLKYIKGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKTAVGVLKIDASENASEDMPLDSLDEHDVGVLKIDASENASEDMPLDSLDEHDVGVLKIDASENASEDIPLDSLDEHDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGHTLPRDRQSAVTSFRSSPEIKIAIIGVLAAGFGLDFSAAQDVVFLELPQSPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTWDESHWKYLNTSLHRVSSTTDGKYDAVKGLEVERVSFLNPSSKIDRSEEQSASEDASVETQLDRQPSAGKSNETEVNQDDESGFVNNISQSANVMVDSDSCIDLGQASVLDGNLDADVFYAGDRCSEESLEDKDNVIEDKKSTSTTDADDNQPTHPVEAEEHCSHQVNSLRFEVSPYTGRIHLYTCILGKDARPQPLNENFRPEDLELLSPADADEKRCIESASVKDNSVYRNALLDFANEWKNLRSIERNRLLGKPLQLPLAVELCYLSESNNHNNKGLINGGSKRRMTPLVDISYPLPSDAVWKKVYLRSGRGKKEKEYTQGWSPKDEPLCKLCQKQCMGSNAKTPEYFEDLFCNLVCHQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVNIRPLSLERRRGYIEKVAPNIAKRKKMFEKLIKDPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCAERRIIRANARKQLKVLMDTMKNNTKGAAGNNNNEVLIFHGVQECMHEDDILVPVPGSAYSLANSQDSGEAAC 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02824 1223 Gene3D - 1035 1171 - -
Mepo5g02824 1223 Pfam HNH endonuclease 1108 1144 IPR002711 GO:0003676|GO:0004519|GO:0008270
Mepo5g02824 1223 Pfam SNF2-related domain 203 451 IPR000330 GO:0005524|GO:0140658
Mepo5g02824 1223 MobiDBLite consensus disorder prediction 730 757 - -
Mepo5g02824 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 710 IPR027417 -
Mepo5g02824 1223 FunFam SNF2 DNA repair protein, putative 159 424 - -
Mepo5g02824 1223 SMART ultradead3 181 370 IPR014001 -
Mepo5g02824 1223 MobiDBLite consensus disorder prediction 805 838 - -
Mepo5g02824 1223 Gene3D - 489 748 IPR027417 -
Mepo5g02824 1223 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1163 - -
Mepo5g02824 1223 MobiDBLite consensus disorder prediction 717 757 - -
Mepo5g02824 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 553 707 IPR001650 -
Mepo5g02824 1223 SMART helicmild6 578 661 IPR001650 -
Mepo5g02824 1223 Gene3D - 184 365 IPR038718 -
Mepo5g02824 1223 CDD SF2_C_SNF 543 672 - -
Mepo5g02824 1223 Pfam Helicase conserved C-terminal domain 560 661 IPR001650 -
Mepo5g02824 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 358 IPR014001 -
Mepo5g02824 1223 CDD HNHc 1106 1146 IPR003615 -
Mepo5g02824 1223 MobiDBLite consensus disorder prediction 805 822 - -
Mepo5g02824 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 425 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02824 Mepo-Chr5 34188303 34205420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g02824 566 679 RAD5 or RAD16-like Gene Family AT1G11100 36.842 7.00e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo5g02824 SNF2_N 7.4e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g02824 K25861 - mtr:120579634 2305.79